Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g00524 ATGGCGGACGAGTTTCAAACTAGTGGAAGCTGGTGGGAGTCGTCCAGAAACAGGTTTGAAAGAGGGATATCCCCGCCTTCTTCAGCTCTGAGTAGCTTAGGGAGCTTCGGGTGGCCTCCAGAAATGGCGGATATGAAAGCAAGGTCGTCAATGGAGTCTGTTTCAGTTTCCAGCAGTTCTTCTTTCGTCTTCCATGATACCCAGAAGTTTCAAGATTCTGATTCCTCAGCCGTTGATCCAAATTTGCAGATGATGGGTTTAGGGCTTTCTTCCCCCACCATAGATTGGAACCAATCCTTACTTCTTGGAGAGAAGTCCGAAATGAGTTTCAGATCGATGCTTCAAGAAAATCTGAACTCAAATAGCAATTTTCACCAACAAAGTGGGCCAAATCAATGGAGAGACAGACTCTTTTCTGGAGATAATTCATCAGAAAACGAGTTTAAGCCATTAAATCGAGGTTTTTCGTTAGATCAACAGGAGTTTAGCGCTCACGATTATAGTGGAGTTGATACCACAGCGACATGTTTAGGGTTATCTTCGAGTTTTCAAATGGATTCATCAGCTCTGTATGGAAATCCAACTACGATTCTACAAGGTTTTGAAAATCAGAATCAGAAAAATTCAAACTCCATAGAATTCTCTTATGGAGCAAACTTTCTCAAGAATTCTAATGAATTTAAGCCTTCTTCTTGGTCTTCTTCTAAAGTTCCTCAGTTTTTGAGAGCTTTACCTCCTAAAAACCAGACCCACCATAGCCATTTGCACTTTTCTAACAACGCTCCCTTCTGGAATGCTTCAGAAGCCGCCATTAAAGACACCAAACCAAGCTTTTTTCCTTCTCTGCAAACACAATTCTACTCACAAAACTTCGAGGAAAAGCCTAAGAATATATCTGAAACACGTGATTCAGGAACTGTAATAAAGAGAAGTGGGAGCCAACAAAATTCCAAAAGGCCAAGAAGTGAAACGCCATCGCCATTGCCAGCTTTCAAGGTGAGAAAAGAAAAGATGGGGGACAGAGTCACTGCACTCCAACAATTGGTTTCACCTTTCGGAAAGACTGATACTGCCTCAGTGCTTTCCGAAGCCCTTGACTACATCAAGTTCCTCCACGAACAAGTTAGTGTTTTAAGCACTCCATACATGAAAAGTGGAGCTGCAATACAACATCAACATAATTTAGACAAGTCCAAGGAGGCAGAAGGGCTGAAGCAAGATCTCAGAAGCCGAGGGCTGTGTTTAGTACCAGTTTCAAGCACATTCCCAGTGACTCACGAAAGCACGGTTGATTTTTGGACGCCAACATTTGGAGGAACATTCAGCTAA 1329 42.51 MADEFQTSGSWWESSRNRFERGISPPSSALSSLGSFGWPPEMADMKARSSMESVSVSSSSSFVFHDTQKFQDSDSSAVDPNLQMMGLGLSSPTIDWNQSLLLGEKSEMSFRSMLQENLNSNSNFHQQSGPNQWRDRLFSGDNSSENEFKPLNRGFSLDQQEFSAHDYSGVDTTATCLGLSSSFQMDSSALYGNPTTILQGFENQNQKNSNSIEFSYGANFLKNSNEFKPSSWSSSKVPQFLRALPPKNQTHHSHLHFSNNAPFWNASEAAIKDTKPSFFPSLQTQFYSQNFEEKPKNISETRDSGTVIKRSGSQQNSKRPRSETPSPLPAFKVRKEKMGDRVTALQQLVSPFGKTDTASVLSEALDYIKFLHEQVSVLSTPYMKSGAAIQHQHNLDKSKEAEGLKQDLRSRGLCLVPVSSTFPVTHESTVDFWTPTFGGTFS 442
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6086778 6088989 - Bma004215.1 Bma10g00524 89587

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g00524 442 MobiDBLite consensus disorder prediction 301 323 - -
Bma10g00524 442 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 7 431 - -
Bma10g00524 442 CDD bHLH_AtbHLH_like 328 379 IPR045239 -
Bma10g00524 442 MobiDBLite consensus disorder prediction 290 330 - -
Bma10g00524 442 Gene3D - 332 398 IPR036638 GO:0046983
Bma10g00524 442 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 332 389 IPR036638 GO:0046983
Bma10g00524 442 PANTHER TRANSCRIPTION FACTOR BHLH123-LIKE ISOFORM X1 7 431 - -
Bma10g00524 442 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 322 371 IPR011598 GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g00524 - - - jre:109014219 556.599
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma10g00524 Bma13g00994 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g00334 Bma-Chr7:4311921 Bma10g00524 Bma-Chr10:6086778 7.71E-85 dispersed
Bma10g00524 Bma-Chr10:6086778 Bma13g00994 Bma-Chr13:42094371 0 dispersed
Bma04g00857 Bma-Chr4:10845691 Bma10g00524 Bma-Chr10:6086778 1.60E-25 transposed
Bma10g00524 Bma-Chr10:6086778 Bma13g01005 Bma-Chr13:42313730 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g384 . . . . Bpe09g00206 . Bma10g00524 Bma13g00994 Cmo16g00923 . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1110 Cone15ag1124 . . . . Blo07g00930 Blo10g00790 Bda05g00748 Bda12g00875 . Bpe03g00813 . . . . . . . Car04g00871 . . Cpe01g00844 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003787 2 3 2 3 2 1 2 1 1 1 1 1 2 2 1 2 1 2 1 1 1 1 1 1 1 1 1 2 3 1 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma10g00524 Bma_Chr10 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0