Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g00525 ATGGATCTTCTGCACAATGCATACTCAAATGCTTCCGATGAGGAAGACGAAACCACGAAGGAAGAAGAAGAAGAAGAAGAACCTTCACCGAAGAGGCTTAATGCTCTTCCTTCTTCAAGCGCAGTCAAATACCTGAACTTACCTCGCAACACTTATCTCTCACATTACCCCAACACCCGTCCGGCTCTCCAAACCGAAGTCCCGGTTCCAGGACGCTATGTTTCCAAGAGAGAGCGAGCATTAATGGATTCAGCTTCAGCTTCGGTCCCTAGGGTTCTTGAATCGAGCTCGAATCCTTCAGTCCCTGCTTCGCCTGCTCATCTCCTTGCTTCTGCTGGGATGGATCACAAAATTTACATATGGAATGTTTGGAACGGAGACCAGAAGGTAGCTCGCACATTAAACTTTCACAAAGCTTCAGTGAAAGATGTAAAATGGTCACCTCAAGGATCGTTCGTTCTTTCTTGTGGTTATGATTGTGTATCAAGATTGATTGATGTGGAGAAGGCCATGGAGATTCAGAAATTTGAGGAAGATGGAGTTGTTGGTGTTTTAAAGTTTAGTCCGACCGACACTAACACCTTCCTCTCTGGTGGATATAAAGGTAGCCTTAGATTATGGGATATTAGAATCGGAAAGGTGGTTCATGAATACATTCGGCGGCTTGGTGAGATTCTAGATGTTGAATTCACCATGAATGGAAAGCAGTTCATATCTTCAAGTGATGTGTCTGGAATTAACGTAAGCGAAAATTCTATCATTATTTGGGATGTCTCGAGACAAATTCCTCTTTCTAATCAAGTGTACGTTGAAGCATACACTTGTCCATGTGTGAGGTGCCACCCATTTGATCCAAGTTTTGTTGCCCAATCAAATGGGAATTACATTGCGATTTTCTCTTTGACCCCACCTTTCAAGCTAGACAAGTATAAGAGGTTCGAAAGCCACGGTGTCTCTGGCTTTCCCATTAAGTGCTGTTTCAGCAAAGATGGGGAGACTCTTGTCTCTGGTTCTTCAGATGGCTTCGATTTACTTCTACAATTACAGAACGACCAAGCTTTTGCGTAA 1068 43.45 MDLLHNAYSNASDEEDETTKEEEEEEEPSPKRLNALPSSSAVKYLNLPRNTYLSHYPNTRPALQTEVPVPGRYVSKRERALMDSASASVPRVLESSSNPSVPASPAHLLASAGMDHKIYIWNVWNGDQKVARTLNFHKASVKDVKWSPQGSFVLSCGYDCVSRLIDVEKAMEIQKFEEDGVVGVLKFSPTDTNTFLSGGYKGSLRLWDIRIGKVVHEYIRRLGEILDVEFTMNGKQFISSSDVSGINVSENSIIIWDVSRQIPLSNQVYVEAYTCPCVRCHPFDPSFVAQSNGNYIAIFSLTPPFKLDKYKRFESHGVSGFPIKCCFSKDGETLVSGSSDGFDLLLQLQNDQAFA 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6095584 6102553 + Bma004216.1 Bma10g00525 89588

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g00525 355 ProSiteProfiles Trp-Asp (WD) repeats profile. 182 217 IPR001680 GO:0005515
Bma10g00525 355 Pfam WD domain, G-beta repeat 132 164 IPR001680 GO:0005515
Bma10g00525 355 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 105 342 - -
Bma10g00525 355 SMART WD40_4 211 257 IPR001680 GO:0005515
Bma10g00525 355 SMART WD40_4 169 208 IPR001680 GO:0005515
Bma10g00525 355 SMART WD40_4 127 166 IPR001680 GO:0005515
Bma10g00525 355 SMART WD40_4 86 122 IPR001680 GO:0005515
Bma10g00525 355 SMART WD40_4 308 343 IPR001680 GO:0005515
Bma10g00525 355 Gene3D - 94 354 IPR015943 GO:0005515
Bma10g00525 355 MobiDBLite consensus disorder prediction 1 38 - -
Bma10g00525 355 SUPERFAMILY WD40 repeat-like 107 346 IPR036322 GO:0005515
Bma10g00525 355 ProSiteProfiles Trp-Asp (WD) repeats profile. 134 175 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g00525 K24742 WDR25; WD repeat-containing protein 25 - qsu:112024714 415.616
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma10g00525 Bma-Chr10:6095584 Bma14g01790 Bma-Chr14:38496182 3.10E-32 dispersed
Bma10g00525 Bma-Chr10:6095584 Bma15g00188 Bma-Chr15:1940254 5.42E-33 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g385 . . . . . . Bma10g00525 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1113 Cone15ag1127 . . . . Blo07g00929 . Bda05g00747 . . Bpe03g00812 . . . . . . . Car04g00870 . . Cpe01g00843 . . . . . . . . . . . . . . . . Chy06g01770 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008063 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 2 1 1 1 1 1 2 2 2 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma10g00525 Bma_Chr10 FPKM 44.917969 46.018036 0.809629 0.680244 1493.206299 1105.126099 1314.614014 0.906009 0.302363 0.566656