Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g00535 ATGAAACATGAACAGAAGAAGGCGTTTCACGAACCAGAATACAGCAAAAATGAAAGTGGGTTTTATAATTTGAGGGAGTGTTATCGTTTGGGCAATCCAGTTGCTACTTCTGCAACCCAGATATCTTGGTCTGAAGCTTTTCACATTGCTGTTAATGAAGTTTCGAGGTTGGATCAAAACAAAAATCTCAGACCCACCATTGAAGCTGTTGTAGCAAAGCTATCCAATATGGCTAAAATCTTAGCTGAGATTTTAGGCAGGAATTTGGGTTTAAAATCTACTTACTTTGATGACAATTGTCCCATTGGCCAAAGTTATCTTCGCCTTAATCGATATCCTCCATGTCCGGTCGATTCCGAGATTTATGGTTTGATTCCTCACACTGACAGTGATTTCCTCACCATTTTATATCAAAATCAAGTCGAAGGACTGCAGTTGTTTAAAGATGGAAAATGGTTTAGAGTCAAACCTAATCCTCAAGCTTTGATTATCAACATTGGAGACTTATTTCAGGCAATGAGCAACGATTTGTACAAAAGCCTGAAGCATAGAGTGATGGCAGCAAAAGGAGAAGAGAGATTATCATTTGCATTCTTCTACTGTCCTTCAAGTAACGCCATTATTGAAAGCTGCTCAAAACCAAGAGTTTACAAGGAATTCAGTTTTGGAGAATACAGAAAGCAAGTAGACAAAGATGTTTATGAAACAGGAAACAAAGTAGGGCTCTCAAGATTTCTCTTGTAA 744 38.04 MKHEQKKAFHEPEYSKNESGFYNLRECYRLGNPVATSATQISWSEAFHIAVNEVSRLDQNKNLRPTIEAVVAKLSNMAKILAEILGRNLGLKSTYFDDNCPIGQSYLRLNRYPPCPVDSEIYGLIPHTDSDFLTILYQNQVEGLQLFKDGKWFRVKPNPQALIINIGDLFQAMSNDLYKSLKHRVMAAKGEERLSFAFFYCPSSNAIIESCSKPRVYKEFSFGEYRKQVDKDVYETGNKVGLSRFLL 247
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6496208 6500999 - Bma004232.1 Bma10g00535 89598

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g00535 247 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 103 202 IPR005123 -
Bma10g00535 247 SUPERFAMILY Clavaminate synthase-like 6 234 - -
Bma10g00535 247 Gene3D - 1 241 IPR027443 -
Bma10g00535 247 Pfam 2OG-Fe(II) oxygenase superfamily 107 202 IPR044861 -
Bma10g00535 247 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 1 240 - -
Bma10g00535 247 PANTHER GIBBERELLIN 2-BETA-DIOXYGENASE 8-LIKE 1 240 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g00535 - - K04125 jre:108983647 315.464
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma10g00535 Bma13g01030 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma10g00535 Bma-Chr10:6496208 Bma14g01569 Bma-Chr14:32367362 9.40E-92 dispersed
Bma10g00535 Bma-Chr10:6496208 Bma13g01030 Bma-Chr13:42892035 6.63E-157 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g450 . . . . . . Bma10g00535 Bma13g01030 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda05g00735 Bda12g00891 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010893 2 1 0 2 0 1 2 1 1 1 1 1 2 1 1 2 1 0 1 1 1 1 2 1 1 1 1 0 1 0 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma10g00535 Bma_Chr10 FPKM 18.275 16.112333 10.988626 11.238942 9.861958 11.586733 9.058704 6.500778 3.55285 8.001533