Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g00542 ATGGCTGCACTCTCTTGCACTACCCTCCTAACCTTGACACCCAAATCCTTCCCTGCTCATCCTCCGTCGTCCAAACTAAGTTCTTGCTTTCTGGGTACCCAGAAAAAGCTCGGGTGGGTGAACCCATTTGGAATTGGACCCTCAAATGGCTGCAGAGCTAAGTGCTGGTTCAAGTTTGGTAAAAATGGTGTCGATGCTGAAGGTGCTGGAATTTATGGCAGCCAATCGAGAGATGACTTTGATAGGGATGATGTGGAACAGTACTTTAATTATATGGGGATGCTTGCTGTGGAGGGTACATATGACAAAATGGAGGCTCTTTTGAGCCAAAACATCCACCCAGTGGATATATTGTTGATGTTGGCCGCATCGGAGGGCGATAAACCAAAGCTGGAAGAGCTATTAAGAGCTGGAGCTAATTACACGATCAAGGATGTGGATGGAAGGACTGCAATCGACCGCGCTCCAAGCGAAGAAATCAAGGATTTCATTCTTAGTTTTTCGGTTCAAAAAGCT 516 46.32 MAALSCTTLLTLTPKSFPAHPPSSKLSSCFLGTQKKLGWVNPFGIGPSNGCRAKCWFKFGKNGVDAEGAGIYGSQSRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLSQNIHPVDILLMLAASEGDKPKLEELLRAGANYTIKDVDGRTAIDRAPSEEIKDFILSFSVQKA 172
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6595462 6596569 + Bma030358 Bma10g00542 89605

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g00542 172 Gene3D - 75 169 IPR036770 -
Bma10g00542 172 SUPERFAMILY Ankyrin repeat 94 162 IPR036770 -
Bma10g00542 172 PANTHER PROTEIN LHCP TRANSLOCATION DEFECT 1 172 IPR044242 GO:0006886|GO:0009570|GO:0090391
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g00542 - - - fve:101302730 273.863
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma10g00542 Bma-Chr10:6595462 Bma13g01038 Bma-Chr13:43048472 1.22E-06 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g474 . . . . Bpe09g00184 . Bma10g00542 . Cmo16g00904 . . . . . . . . . . . . . . . Cla10g00520 Cam10g0514 Cec10g0531 Cco10g0520 Clacu10g0536 Cmu10g1362 Cre10g0765 Cone6ag0076 . . . . Csa03g00528 . Cme06g02268 Blo07g00912 Blo10g00817 Bda05g00728 Bda12g00899 . Bpe03g00798 . . Sed07g1919 . . . . . Car16g00849 . . Bhi11g00638 Tan01g1688 Cmetu06g2671 . Hepe07g1192 Mch10g1243 . . . . . . . . Lsi05g00614 . Chy06g01803 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010171 2 1 2 1 2 1 1 1 1 1 1 1 0 1 1 1 1 2 0 1 1 1 1 0 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma10g00542 Bma_Chr10 FPKM 4.617321 5.665011 5.092919 5.751792 5.268453 5.131453 5.385112 3.552656 3.028965 3.461282