Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g00543 ATGAACTGCTTTCCATGCTGCAAATCACAAGAAAGATTCAACAGGAAGTCATTGAAAAAGAGCATTAAGGAGTATCATGATGCAAAAACTTTAGCCTCATTTGCTAACATCTCCTTCAAATCTGATGGAAGCAGAAAAAGATACATAACTGAAGAGATAAAGAAGATAGGTAAAGGAAACATATCTGCTCAGATATTCTCTTTTCGGGAGCTCTGTGTTGCAACAGACAATTTCAACCCAGAGAATTTGATAGGCGAAGGTGGCTTTGGTAGAGTTTACAAAGGCCAAATTGGAGGAAGTAAACAGACCGTAGCTGTTAAGCAACTTGACAGAAATGGGTTTCAGGGAAACAGAGAGTTCCTCGTAGAGGTTTTGATGCTGAGTCTTCTTCACCATCCTAATCTTGTGAATTTGGTCGGATATTGCACCGACGGTGAGCAGAGGATTCTTGTTTACGAGTATATGTCTAATGGATCGTTGGAAGATCACCTTCTTGATTTAGCTCCAGACAGAAAGCCTCTGGATTGGAAAACTAGAATGAAAATAGCAGAAGGAGCAGCAAAAGGACTTGAATACTTACACGAAACAGCAAATCCTCCGGTGATATACCGTGATTTCAAAGCATCAAATATACTGTTGGATGAAGAATTCAATCCGAAACTCTCAGATTTTGGCCTTGCAAAATTAGGTCCAACAGGGGATAAAACTCATGTATCGACTAGAGTTATGGGAACCTATGGTTACTGCGCTCCGGAATACGCTCTAACAGGTCAATTAACCTCAAAATCCGATGTTTACAGCTTTGGGGTAGTGTTTCTGGAGATAATCACTGGAAGAAGAGTCATCGACAACGCTAGACCAAGCGAAGAACAAAACCTAGTCACTTGGGCCCAACCGCTGTTTAAAGACAGAAGGAAGTTTACCTTAATGGCAGATCCGATGCTGGAGGGAAATTATCCAGTCAAGGGGCTTTACCAAGCCCTAGCAGTTGCAGCAATGTGCCTTCAAGAGGAAGCAAGCACTCGGCCTTTGATAAGCGATGTGGTCACTGCTCTTGCATATTTAGCCACAGAAAAGAACGAAGAAGACTAA 1092 41.94 MNCFPCCKSQERFNRKSLKKSIKEYHDAKTLASFANISFKSDGSRKRYITEEIKKIGKGNISAQIFSFRELCVATDNFNPENLIGEGGFGRVYKGQIGGSKQTVAVKQLDRNGFQGNREFLVEVLMLSLLHHPNLVNLVGYCTDGEQRILVYEYMSNGSLEDHLLDLAPDRKPLDWKTRMKIAEGAAKGLEYLHETANPPVIYRDFKASNILLDEEFNPKLSDFGLAKLGPTGDKTHVSTRVMGTYGYCAPEYALTGQLTSKSDVYSFGVVFLEIITGRRVIDNARPSEEQNLVTWAQPLFKDRRKFTLMADPMLEGNYPVKGLYQALAVAAMCLQEEASTRPLISDVVTALAYLATEKNEED 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6598170 6600378 - Bma004242.1 Bma10g00543 89606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g00543 363 SUPERFAMILY Protein kinase-like (PK-like) 61 352 IPR011009 -
Bma10g00543 363 PANTHER OS07G0668900 PROTEIN 1 357 - -
Bma10g00543 363 Gene3D Phosphorylase Kinase; domain 1 49 154 - -
Bma10g00543 363 Gene3D Transferase(Phosphotransferase) domain 1 155 363 - -
Bma10g00543 363 ProSitePatterns Protein kinases ATP-binding region signature. 84 107 IPR017441 GO:0005524
Bma10g00543 363 CDD STKc_IRAK 84 352 - -
Bma10g00543 363 ProSiteProfiles Protein kinase domain profile. 78 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma10g00543 363 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672|GO:0006468
Bma10g00543 363 Pfam Protein kinase domain 81 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma10g00543 363 PANTHER RECEPTOR SERINE/THREONINE KINASE 1 357 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00084 Bma-Chr4:681069 Bma10g00543 Bma-Chr10:6598170 2.45E-90 dispersed
Bma08g00556 Bma-Chr8:33652638 Bma10g00543 Bma-Chr10:6598170 1.59E-112 dispersed
Bma10g00543 Bma-Chr10:6598170 Bma15g00679 Bma-Chr15:11162224 1.53E-166 dispersed
Bma13g01189 Bma-Chr13:45177803 Bma10g00543 Bma-Chr10:6598170 6.95E-79 dispersed
Bma02g00880 Bma-Chr2:47096760 Bma10g00543 Bma-Chr10:6598170 0 transposed
Bma04g00288 Bma-Chr4:2323193 Bma10g00543 Bma-Chr10:6598170 3.63E-149 transposed
Bma04g01114 Bma-Chr4:26259746 Bma10g00543 Bma-Chr10:6598170 0 transposed
Bma06g00630 Bma-Chr6:33471897 Bma10g00543 Bma-Chr10:6598170 1.91E-80 transposed
Bma12g00196 Bma-Chr12:2628165 Bma10g00543 Bma-Chr10:6598170 1.70E-51 transposed
Bma13g00737 Bma-Chr13:22676942 Bma10g00543 Bma-Chr10:6598170 2.56E-100 transposed
Bma15g00213 Bma-Chr15:2120393 Bma10g00543 Bma-Chr10:6598170 1.35E-71 transposed
Bma10g00543 Bma-Chr10:6598170 Bma13g01040 Bma-Chr13:43076731 1.87E-108 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66735 PF00069 Pkinase 4.30E-46 CL0016 Bma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g00543 - - qsu:111998873 645.195