Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g00545 ATGAGTCAGTCTGATCCTGTAAATACACCCACACCCATTATGTCTCTGTCAGCAGATGCCCCTGAGAAGCGCGGACGCGGTCGTCCACGGAAATATCCTAGACTCAATTTTGAAGAAAATGTCAGTGGTGAAAAAAATATGAACTGTAAAGCGCAGGGATATGGGCAAGTAAATCGAGGTGAGAGTGGCTCTGATCTGATGCTTGGACAGGTAGTGTCGGGTGTCATCGAACCTAGTTATATATCTGCAACAGGAAAACAGATTTCTCCATTGGCTTCCCAAACTGCTCATCCAGTACTCTCGAGGGGTAATGTGGTGCCTGTAATACTTCAGCCTTCTAATTTAGTAAAGGGAGCTCCGGTTTCTAGCGAATCATCAGATGTTGCAACCTCTAAAGGCAAACAAGTTCCTGAAGCTTCAATTCCATCAAATGAATCAACACCAGATGCTGCGGCTGTTGACAAAGAAGCTCTTTTCTCCCAATCTCAAATTTGCCAACCGGTAGATACAGAAGGTATTCATTTTGAATATGATCCTTCTAATGAACCCCCGTCTGGGAGCTTGGATGACGTGGAAGCCAAATCAACAAAATTCCCTGGTTTGCCTTTTGAGAACCTGGTAACTGAAGTCATCAAGAGAATTCACCCTTCCCCATTAGAAGAGACCCAGATAGAGTTTAACCAGTTTGCTAGCAATAGCCTAGAGGAGGAGACTAATAATAATGCAGCTCAGCCTCTGATAATTGAGCCTCTGCAAGCCGTACAGCCTGACCCTCCGGCCAATACAGAATCTTTTCCTGAACCTCTCGAGAACAATAGAGCCAACAGAATGAGTGAGCTTCTGCAGGTAAAATTGGATTAA 861 44.6 MSQSDPVNTPTPIMSLSADAPEKRGRGRPRKYPRLNFEENVSGEKNMNCKAQGYGQVNRGESGSDLMLGQVVSGVIEPSYISATGKQISPLASQTAHPVLSRGNVVPVILQPSNLVKGAPVSSESSDVATSKGKQVPEASIPSNESTPDAAAVDKEALFSQSQICQPVDTEGIHFEYDPSNEPPSGSLDDVEAKSTKFPGLPFENLVTEVIKRIHPSPLEETQIEFNQFASNSLEEETNNNAAQPLIIEPLQAVQPDPPANTESFPEPLENNRANRMSELLQVKLD 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6626330 6627498 - Bma004244.2 Bma10g00545 89608

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g00545 286 MobiDBLite consensus disorder prediction 117 147 - -
Bma10g00545 286 MobiDBLite consensus disorder prediction 173 192 - -
Bma10g00545 286 PANTHER AT HOOK MOTIF-CONTAINING PROTEIN 83 284 IPR045881 -
Bma10g00545 286 MobiDBLite consensus disorder prediction 117 151 - -
Bma10g00545 286 MobiDBLite consensus disorder prediction 1 15 - -
Bma10g00545 286 PANTHER AT HOOK MOTIF-CONTAINING PROTEIN 17 77 IPR045881 -
Bma10g00545 286 MobiDBLite consensus disorder prediction 254 286 - -
Bma10g00545 286 PANTHER AT HOOK MOTIF-CONTAINING PROTEIN 17 77 - -
Bma10g00545 286 MobiDBLite consensus disorder prediction 1 39 - -
Bma10g00545 286 ProSitePatterns HMG-I and HMG-Y DNA-binding domain (A+T-hook). 20 31 IPR000637 GO:0006355
Bma10g00545 286 PANTHER AT HOOK MOTIF-CONTAINING PROTEIN 83 284 - -
Bma10g00545 286 MobiDBLite consensus disorder prediction 21 38 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g00545 - - - zju:107432055 146.747
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g505 . . . . Bpe09g00178 . Bma10g00545 . Cmo16g00900 . . . . . . . . . . . . . . . Cla10g00509 Cam10g0504 Cec10g0521 Cco10g0508 Clacu10g0525 Cmu10g1351 Cre10g0755 . . . . . Csa03g00518 . Cme06g02257 Blo07g00908 Blo10g00828 Bda05g00724 . . Bpe03g00794 . . . . . Cma04g00946 Cma16g00863 . . . . Bhi11g00624 . . . . . . . . . . . . . Lsi05g00603 . Chy06g01812 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004473 1 5 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 0 1 1 1 1 1 1 1 1 1 5 1 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma10g00545 Bma_Chr10 FPKM 1.184579 0.0 17.871861 22.125288 22.152325 20.487492 19.446203 0.0 0.26799 0.0