Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g00551 TTTGAAGATATTTATTTTGATTTACATATTTTAGAAAGGAGGCAGGCAGAAGCAGCTCGAATTAGGGAGAAGTATCCTGATAGAATCCCAGTTATTGTGGAGAAGGCTGAAAGAAGTGACATATCTGATATTGACAAGAAGAAATACTTGGTTCCTGCCGATTTAACCGTTGGGCAGTTTGTGTACGTTGTTCGTAAGAGGATCAAGCTGAGCGCTGAAAAAGCGATTTTCATCTTTGTCAAGAATATTTTGCCACCTACTGCTGCATTGATGTCGGCAATCTATGAAGAAAACAAGGACGAAGACGGTTTCCTCTACATGACATACAGTGGCGAAAACACGTTTGGATTGTTCTAA 357 39.78 FEDIYFDLHILERRQAEAARIREKYPDRIPVIVEKAERSDISDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAALMSAIYEENKDEDGFLYMTYSGENTFGLF 118
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6668874 6669510 + Bma004251.1 Bma10g00551 89614

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g00551 118 Gene3D - 2 117 - -
Bma10g00551 118 CDD Ubl_ATG8 11 113 - -
Bma10g00551 118 PANTHER MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3-RELATED 9 116 IPR004241 -
Bma10g00551 118 SUPERFAMILY Ubiquitin-like 8 116 IPR029071 -
Bma10g00551 118 PANTHER AUTOPHAGY-RELATED PROTEIN 9 116 - -
Bma10g00551 118 Pfam Autophagy protein Atg8 ubiquitin like 13 116 IPR004241 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g00551 K08341 GABARAP, ATG8, LC3; GABA(A) receptor-associated protein - pda:103697397 203.756
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g01599 Bma-Chr7:51263008 Bma10g00551 Bma-Chr10:6668874 7.69E-67 dispersed
Bma08g00622 Bma-Chr8:39010759 Bma10g00551 Bma-Chr10:6668874 4.65E-65 dispersed
Bma08g00637 Bma-Chr8:40359052 Bma10g00551 Bma-Chr10:6668874 4.26E-64 dispersed
Bma09g00821 Bma-Chr9:46950712 Bma10g00551 Bma-Chr10:6668874 1.09E-21 dispersed
Bma10g00551 Bma-Chr10:6668874 Bma12g00806 Bma-Chr12:37617335 7.28E-65 dispersed
Bma10g00551 Bma-Chr10:6668874 Bma06g01298 Bma-Chr6:50021492 1.65E-66 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g525 . . . . Bpe09g00171 . Bma10g00551 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone15ag1167 . . . . Blo07g00902 . Bda05g00718 Bda12g00912 . Bpe03g00790 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000267 6 8 5 7 6 4 7 4 4 5 4 4 5 5 5 6 4 9 4 3 5 4 4 3 2 2 4 9 8 5 151
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma10g00551 Bma_Chr10 FPKM 2.151222 1.580089 143.110504 141.140198 5.201111 3.983281 4.19416 1.002595 0.855187 1.061316