Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g00553 ATGGCTATCATGGATCTGATAGAGCAACAATTTTTGATGTTTTTTTTGTCAGGGACTCCACCTCATATTCAATCTGGGATACCGCTTCCTGATAAGAAAACATTGGAATTGATTCTCGACAAACTTCAGAAGAAAGACATTTATGGTGTGTACGCCGAACCAGTTGATCCAGAAGAGCTCCCTGATTATCACGATGTAATCGAGCATCCAATGGACTTTGCTACGGTGAGGAAGAACTTGGCTGCTGGAGCCTATTCAACTTTGGAACATTTTGCGACTGATGTATTTCTTATTTGCTCAAATGCTATGCTATATAATGCACCAGAGACCATATACTATAAACAGGCTCATACCATACAAGAGCTTGCCAAGAAGAAATTTGAAAGATTAAGAGTTGATTATGAATCCTCTGAAAAAGAGCTCAAGCTAGAGCAGAAAACAAAATCCAATTGCTTAGTTAAGAAACAGATAAAGAAGCTGCCAGGCCGGATCTCACAGGAACCAATGGGATCAGATTTTTCCTCAGGTGCAACTCTTGCCACTGCTGGAGATATTCAGAACTCCTCCTATCCGGCCCAAGGTGGTGGTTATGAGAAAAATAGCAATATTGATGGGCATGTTGAAGGGAATTCTTCTTTATTTGAGAATAATTTGGAGAAAGCTGAAGAATTATTCTCAGGGAAGAGTTTCTCATCAAGATTAGGGAGGAAAGCAGTGCTGCTTGATGAAAACCGTCGAGCAACATATAATATTTCTAATCAGCCAGAAGTCAGATCAGAATCAATATTAACTACTTTTGAAGGAGAAATGAAGCAACTTGTTGCAGTTGGCCTTCATGCAGAATATTCATATGCCAGGAGCCTGGCTCGCTTTGCTGCAACTCTTGGGCCAGTCGCTTGGAAAGTTGCCTCCAAGAGGATTGAGCAGGCCCTTCCTGCAGGTTGTAAATTTGGCTTAGGTTGGGTTGGAGAATATGAGCCACTTCCAACTCCAGTACTTCTATTTGAAAATCGTAACCCGAAGGAATCTGGTCTATGTACTCCTGTGTGTTCCGCTGCTGAATTGAGAAAGAATGAAATATTGTCGAAGATTCCTTTTCCAACCGAGGAAAACCGTACCAATGGGCCTGTTTCCGAGGTGAAACAATCTTTGTTGGATCCCGTCAGGCGGGATATTTCAGATGGAAAACCATCATTGTTTGGCTCTGGAGGGATCAAACACAGTCTTCCTTTAAATTCTACGTATCAGCAGCAAAACCTGCAACACCAGCAACCCAACAATTTTACCAAGCCAAGCAAGATAAAAAATCAGTTTGAATTAAACTTGTTGCCTTCCCCCAATCAGAATCATGCTGATCCTGTACCAGAAAAGCAATCTAATTCGCAATCTATTGCTTCCAGGTCCAAAGACTCGGCCCCTGTTAAAATGAGTCTTCTACCTTCTGGATCTTTTAAACTGCCAGATTCTAATGGAGTTGTGGCCGGAGGACTACCCAACGGAAAAGTTGTGACTGATTGCTTAAATAGTCATCCTGTTATTGTTTCTTCTGGTGGTCTTCCTGATCAAATAGCTAGAGTGGCAGCATACTCCTCCCATGGACAAGAACAGGGTCTCACTGACCCAGTTCAGTTAATGAAATCATTGAGTGAAAAGGCTCAAAGGCAACAAAAATACATCAGTCAAGGTCCGATTGAAGCTCCACCGGTCTTGACAGTAGAGTCCAATTCCATAAGGAAAACCGAATCCAACAATGCTTCCATGACAGCTGCCCGGGCGTGGATGTCTGTTGGAGCTGGAGGTTTTAAAAAAATTGCTGAAAATTCTAGCCTGCCAAATAATCACATATTAGCAGACTCGTTATACAACCCAGCGAGGGACTTCAATCCTCAAATCACTAGAGTTCATGGGGAGCCTCCTTGTACTGGGGGGAACAAATTTCATTCTGAGAGGAACGGAAACCCGTTGCAGGCATGTTTACCTCAGTCTGTTCGCAAGGGTATGGAATCACAGCTCCAAAGCCAACCTAAAGTTTTTCCCCAGCTAGCTCAAGCCGACTTGTCCAGGTTTCAAGTGCATCCCCATTGGCAAGGTCTCCGCCCGCATGCTCAGCCTAGGCAGAAGCAAGAAATGCTTCCCCCAGACTTGAACATTGGTTTCCAGAGTCCAAGTTCTCCAGTGAGACATTCCTCTGGCGTCCAAGTGGACTCACAGCAGCCCGACCTGGCTTTGCAACTTTGA 2238 43.74 MAIMDLIEQQFLMFFLSGTPPHIQSGIPLPDKKTLELILDKLQKKDIYGVYAEPVDPEELPDYHDVIEHPMDFATVRKNLAAGAYSTLEHFATDVFLICSNAMLYNAPETIYYKQAHTIQELAKKKFERLRVDYESSEKELKLEQKTKSNCLVKKQIKKLPGRISQEPMGSDFSSGATLATAGDIQNSSYPAQGGGYEKNSNIDGHVEGNSSLFENNLEKAEELFSGKSFSSRLGRKAVLLDENRRATYNISNQPEVRSESILTTFEGEMKQLVAVGLHAEYSYARSLARFAATLGPVAWKVASKRIEQALPAGCKFGLGWVGEYEPLPTPVLLFENRNPKESGLCTPVCSAAELRKNEILSKIPFPTEENRTNGPVSEVKQSLLDPVRRDISDGKPSLFGSGGIKHSLPLNSTYQQQNLQHQQPNNFTKPSKIKNQFELNLLPSPNQNHADPVPEKQSNSQSIASRSKDSAPVKMSLLPSGSFKLPDSNGVVAGGLPNGKVVTDCLNSHPVIVSSGGLPDQIARVAAYSSHGQEQGLTDPVQLMKSLSEKAQRQQKYISQGPIEAPPVLTVESNSIRKTESNNASMTAARAWMSVGAGGFKKIAENSSLPNNHILADSLYNPARDFNPQITRVHGEPPCTGGNKFHSERNGNPLQACLPQSVRKGMESQLQSQPKVFPQLAQADLSRFQVHPHWQGLRPHAQPRQKQEMLPPDLNIGFQSPSSPVRHSSGVQVDSQQPDLALQL 745
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6691174 6695477 - Bma004254.1 Bma10g00553 89616

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g00553 745 SMART bromo_6 24 132 IPR001487 GO:0005515
Bma10g00553 745 PANTHER DNA-BINDING BROMODOMAIN-CONTAINING PROTEIN 17 745 - -
Bma10g00553 745 CDD Bromodomain 31 127 - -
Bma10g00553 745 ProSiteProfiles Bromodomain profile. 43 113 IPR001487 GO:0005515
Bma10g00553 745 MobiDBLite consensus disorder prediction 712 745 - -
Bma10g00553 745 Pfam Bromodomain 37 117 IPR001487 GO:0005515
Bma10g00553 745 MobiDBLite consensus disorder prediction 443 470 - -
Bma10g00553 745 MobiDBLite consensus disorder prediction 717 745 - -
Bma10g00553 745 PANTHER BROMODOMAIN CONTAINING PROTEIN 17 745 - -
Bma10g00553 745 ProSitePatterns Bromodomain signature. 49 105 IPR018359 -
Bma10g00553 745 SUPERFAMILY Bromodomain 23 131 IPR036427 GO:0005515
Bma10g00553 745 PRINTS Bromodomain signature 94 113 IPR001487 GO:0005515
Bma10g00553 745 PRINTS Bromodomain signature 60 76 IPR001487 GO:0005515
Bma10g00553 745 PRINTS Bromodomain signature 76 94 IPR001487 GO:0005515
Bma10g00553 745 Gene3D - 30 151 IPR036427 GO:0005515
Bma10g00553 745 Coils Coil 120 147 - -
Bma10g00553 745 MobiDBLite consensus disorder prediction 443 476 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g00553 K22184 BRD9; bromodomain-containing protein 9 - qsu:112014188 864.374
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma10g00553 Bma13g01065 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00637 Bma-Chr3:5268865 Bma10g00553 Bma-Chr10:6691174 2.05E-87 dispersed
Bma08g00717 Bma-Chr8:43014428 Bma10g00553 Bma-Chr10:6691174 8.47E-86 dispersed
Bma10g00553 Bma-Chr10:6691174 Bma12g01074 Bma-Chr12:43025800 1.52E-12 dispersed
Bma10g00553 Bma-Chr10:6691174 Bma13g01065 Bma-Chr13:43360999 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g528 . . . . . . Bma10g00553 Bma13g01065 . . . Cma09g00958 Car01g00997 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme01g01022
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005656 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma10g00553 Bma_Chr10 FPKM 21.657602 25.892704 14.541069 14.943592 36.416203 34.806824 34.642128 36.802319 40.083225 39.180592