Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g00555 ATTGAAAACTTCATAAACTTTTGTCTCAGTGTGGGAATTTCTTACTATGACTCTAGTATTCGCCAACTTCATGTGCTGGAAGTTTGGGAAGACGATAGCACAAATTTCCCCTTGATTGATCTGGTAAAGTATCAAGCTAAGCCCCTGATAATTTACACAAGCACTAAATCTGAAGAATCTTTTTTATCTGCTTTACAGCGTAGTGATGGCACAAATGAGCCTTCACAAGTGAAACTGGTGAAAAGTTCAATATTTAACTATGAGCAAGCTTGGCACAGATTGATATACCTTAGAGTGACAGGAATGGATGATGGGTTAAACGTCAAGGAGCGAATATGCTATTTAAGTTCAATGATGGACATGGGAAGTGATGTTGAAGTTCGTGCAAGTGGGGGTCTTCTTGCCATATTAGAGAATGAACGGATAATAGACACTCTTGAGCAAAAGGAACATGGAACTTCATCAATTACAATCGATTCTGTGGTGGAAATTTCATTAAATACGTTTCTTAAACTTGACGCTGCTGCACTAGAAGCATTGCAGATTTTCCAAACAGACAAACATCCGAGCCATATGGGCATTGGCAGAGCCAAAGAAGGGTGTGTTTTAATCCAGAATTTGGTTAAAATGATTACTTTCTATAGAAACTGGTTTTTGAGACCAATTCTCGACCTTGACAATTTGAACAGACGTCTCAATGTTAAATTCAACTCTCCAAGCTTCATGTGTACGCCTAATGATTGGACAGCATTTGTAAAGAGCATCAGCTCACTCTTATATATAAACAAGATATTTGAAGTAGGGATTTCGGAGAATCTTAGGGAGCTAGCAAAGTACTTAGATTTGGACATAATTGAGAAGGTTTTTCCTTTTCTGTTTGCATTACCAGGTGGCTTGATAGATGTGCTGTTCTCTATATATTATTTGATTTTTGCACAGGCTAATTCATGCTTTACCTCAGAGTTGGCTTATGTATACGAATTGGTAAGTATAATTGGCGTACTTGATGTTGGCAGAGCAAAAGAGAAGGGATACGAAACACTTGTCAAGGAAGGTTTTTGTGATGAGTTGGATGAACTGAGGCAGATTTATGAAGAATTGCCTGAATTTCTAGCAGAGGTTCGTTCCATGCCAATTGATAAAGCAAATGATATTGAACTGCTTCAACTACTAAGTTTAATATTTTATTTTTATATATTTGCAGGCTACTTGATGTGCATTTTTGAGGAAAAGCTTGATGAAACGACATTGGAGACACTAAAAGATTTTGAATTTGTTTTTAGTGATGTTGATGGAGATATGAGAAGATTTTTTTATCGTACGCCAAAGTCACGAGAGTTGGATAATCTGCTTGGAGATATTTATCATAAAATTCTAGACATGGAGAGGGCAATTATTAGAGACTTGGTGTCGCACATACAACTCTTCTCAGTGCATCTTCTTACTGCTGTCAGTTTTGCAGCTGAACTTGATTGCTTTTTGTCTTTGGCGCTTGTTGCTCGTCAAAGCAACTATGTAAGGCCTGTCTTGACTGCAGATAACGTGCTCGACATAAAAAATGGAAGACATGTTTTGCAGGAAATGACAGTGGACACTTTTATTCCTAATGACACAAAAATTTCAGATGATGGAAGAGTTAACATCATCACTGGTCCAAACTACTCTGGGAAAAGTGTATACATAAAGCAGGTAGCTTTAATTGTTTTCTTGTCTCACATTGGGAGTTTTGTACCAGCAGATGCTGCAACTGTGGGTTTGACCGACAGAATATTTTGTGCAATGGGAAGCAAGCTTATGACAGCAGAACAGTCGACCTTTATGATTGATCTACATCAAGTAGGGATGATGTTAAGACAGGCAACTTCTCAATCTTTGTGTCTCTTGGATGAATTTGGTAAAGGTACACTGACTGAAGATGGTATTGGCCTGCTTGGTGGAACCATCAATCACTTTGCTACCTGTAATGAACCTCCAAAGGTCCTGGTGTGCACACATTTGACTGAGTTACTTGATGAGAGTTACTTATCAACGTCCGAGACAATCAAATTTTACACTATGAGCATGCTAAAGCCTGACAGACATTCTACAGAATCTGAAGACATAGTATTTCTGTATCGTTTGGTACCTGGGCACGCTCTTCTTAGCTACGGTGTTCCCGAGGAAGTTATCAGGAGAGCAGCATTTGTCTTGGATGCTATTCAGAACAATAAACATGTTGAGCGACAATTTAATGAAAAAATCTCTGCGCAAGATAAGATATATGAGAAATCAGTGGATAAGATGTTGGCGTTTGACGTTTACAATGGAGATCTCACCCTTTTCTTCCAGGATGTATTTCCTTCT 2343 38.37 IENFINFCLSVGISYYDSSIRQLHVLEVWEDDSTNFPLIDLVKYQAKPLIIYTSTKSEESFLSALQRSDGTNEPSQVKLVKSSIFNYEQAWHRLIYLRVTGMDDGLNVKERICYLSSMMDMGSDVEVRASGGLLAILENERIIDTLEQKEHGTSSITIDSVVEISLNTFLKLDAAALEALQIFQTDKHPSHMGIGRAKEGCVLIQNLVKMITFYRNWFLRPILDLDNLNRRLNVKFNSPSFMCTPNDWTAFVKSISSLLYINKIFEVGISENLRELAKYLDLDIIEKVFPFLFALPGGLIDVLFSIYYLIFAQANSCFTSELAYVYELVSIIGVLDVGRAKEKGYETLVKEGFCDELDELRQIYEELPEFLAEVRSMPIDKANDIELLQLLSLIFYFYIFAGYLMCIFEEKLDETTLETLKDFEFVFSDVDGDMRRFFYRTPKSRELDNLLGDIYHKILDMERAIIRDLVSHIQLFSVHLLTAVSFAAELDCFLSLALVARQSNYVRPVLTADNVLDIKNGRHVLQEMTVDTFIPNDTKISDDGRVNIITGPNYSGKSVYIKQVALIVFLSHIGSFVPADAATVGLTDRIFCAMGSKLMTAEQSTFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINHFATCNEPPKVLVCTHLTELLDESYLSTSETIKFYTMSMLKPDRHSTESEDIVFLYRLVPGHALLSYGVPEEVIRRAAFVLDAIQNNKHVERQFNEKISAQDKIYEKSVDKMLAFDVYNGDLTLFFQDVFPS 781
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6704544 6714241 - Bma030359 Bma10g00555 89618

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g00555 781 CDD ABC_MSH5_euk 517 718 - -
Bma10g00555 781 PANTHER MUTS PROTEIN HOMOLOG 5 10 760 - -
Bma10g00555 781 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 10 760 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Bma10g00555 781 SMART mutATP5 544 731 IPR000432 GO:0005524|GO:0006298|GO:0030983
Bma10g00555 781 SMART DNAend 198 529 IPR007696 GO:0005524|GO:0006298|GO:0030983
Bma10g00555 781 Pfam MutS domain V 548 735 IPR000432 GO:0005524|GO:0006298|GO:0030983
Bma10g00555 781 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 505 734 IPR027417 -
Bma10g00555 781 SUPERFAMILY DNA repair protein MutS, domain III 173 504 IPR036187 -
Bma10g00555 781 Gene3D - 505 768 IPR027417 -
Bma10g00555 781 Gene3D - 442 497 - -
Bma10g00555 781 PIRSF MSH2 6 765 IPR011184 GO:0005524|GO:0006298|GO:0030983
Bma10g00555 781 ProSitePatterns DNA mismatch repair proteins mutS family signature. 624 640 IPR000432 GO:0005524|GO:0006298|GO:0030983
Bma10g00555 781 Gene3D - 346 441 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g00555 K08741 MSH5; DNA mismatch repair protein MSH5 - vvi:100252044 1098.57
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma10g00555 Bma-Chr10:6704544 Bma14g02081 Bma-Chr14:44157620 3.97E-37 dispersed
Bma10g00555 Bma-Chr10:6704544 Bma07g00480 Bma-Chr7:5808604 4.53E-21 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g533 . . . . . . Bma10g00555 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1154 . . . . . Blo07g00899 . Bda05g00714 . . Bpe03g00787 . . . . . . . . . Cpe14g00746 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004808 1 7 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 4 1 1 1 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma10g00555 Bma_Chr10 FPKM 28.125832 29.213482 51.096386 50.950584 24.233641 23.336323 25.62528 64.899208 67.77655 72.053658