Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g00556 CCGGAAATGGAGGAGGCCTCCTTTGTGTCCAAAGCGAGGACCGCTTTTCATTCTGCGGCAGCTAAAGCGGAGCGTGTTTTCACAGATTTCAAATCTGATCGAGGAGATTCTGATAAACAGTCACCAGTGGATTTGTTAAATCGAGCTGAGGTTGTGTATCAGAAGAAGAGCAACAATAAAAAGTGTGACAGTGAATCGAAGCATTCCAGCTGGACTCACGTTGGCACCAAACAAGATTGGCAAGATAGGTTCAGGAATATTAAATTAGGGAGGAAAATAGTCGAGGATACAGAGAAAAGTGAAGATTCAGCTATGGCCGTTCCATTTTATGATGAGAATTTGTATCTGCTGAACATGAAAAATGATCTTGAGGCAAAGGTTTCTGAAGTGATTCCATCAGTGGAAAGTTTTATAGCTGCCAGTGGAAAGAGTGTTCCTCCCATTTATGTTCTGAAGCAATTGGCAATAGCTGTGGAGGCTGGCAAAAAATATAAGTCCATGAAGGATTTACTTGCATCATCTGGAGATTCTTCACCTGCTAGGGAGAGATCCAGTTTAAGTCTTGCAGCAATGAAGTCATTACTGCTGCGGGATAAGGAGGAAAGGTTTTCAACCGAGTATACGAAAGATGATAGAGTTAATTTACTAATTCAATCTCTATTTGATGCAGATGGAAATTTTCTCGAAAGGAATTTTGGCTCTGGAATAGAAGACATCACGTTTACATCTTTGCACAAAGATATTCATGGTTCTCCTCCCCAAAGCCTAATTGTTAAGATATCTGAAGTCATGGGAAGCTTCAAAGCAATGCGAAAAATGGCACTTTTTTGGTGCAAGGCTGTTACTGAAATGAGACAGCTTTGGTCTGAAGGGCAGTACATACCATGCATTCCTAAAGATGATATCCCAGATCTACATTCCTGTCTTTTATACCAGCAATTCCAGGTCATCAATTGTTGCCTGTCTAGGAAAAGGCGTCGTGATATAGTGACTGAATCATTAGACTATGTGATAAGTAAGGCTAGTTCTGATGCGGAATTGGCTGTTTCACAAGTTATAGATCCTGAAGAGCCGTTGCTTACAGAAGATGTTATTAAAGAAACAGAGGAATTTGTTCTTCGTACTGGGAGTGTCGGGGCCGGATGTTCTCAACTTCTCTCGGACATGCAGGCTTTCAAGGCTGCAAATCCGGGTTGTATTTTGGAAGATTTCGTGAGATGGATCTCCCCTCCTGATTGGACAGAAAATGAACGAAGTTCTGATGCTAGAGATGACACTCCTAGTGGAGACTTAAGAGGTCAATTAAGTAGTCGAATGCAAAAAGAAGGCAATTTGTGGCGCGAGCTTTGGGAAACAGCCAAACCCATGCCTGCTGTTAGACAAGCACCCCTCTATGATGAGGATTTGGCTGTGGAAGGTATCCTGAATTATCTAGAGGATATTTTACCATCTGAGCTTTTTGAACAGCTGTTTGTTTCTTTGGTTGGTTTAGGGCTTGTCATAGCTGAATCTCATAGCAACTTCTCTAAGTTTTTCTATGAATGCAAGGACTATGTCGTTGCCTCTTTTCAAGGTGGTCTATGGAGTGAAAAAGTTAACGATATTTGTGAGGTCTATGAAACAGTGGAGGCAATGTTAGTGAATCCAGACGAAGTCCTGAAAATGTTTAAGCAGCCGGAAACAGAGACAGGTGAGATTTCAGGCGAGACTAAACGCCGTTTTAAGAGACTCAGTCTCAAATTTGGCAGTAATGATAAAAGCTCGAAAAAATCGACGACACAAGATTCGAAGAATGGGCAACCATTTTCAACTTTCTTTGACAGAAAGTCATCTTTATTTTCAAAGAAGCCTCCAAAGCCAGAAATCCCCACTCCGGCTGAAAAATCTCCTTGTCCGGACGAAAACGATTGCGAATGGACCCTTGTTTAG 1929 41.73 PEMEEASFVSKARTAFHSAAAKAERVFTDFKSDRGDSDKQSPVDLLNRAEVVYQKKSNNKKCDSESKHSSWTHVGTKQDWQDRFRNIKLGRKIVEDTEKSEDSAMAVPFYDENLYLLNMKNDLEAKVSEVIPSVESFIAASGKSVPPIYVLKQLAIAVEAGKKYKSMKDLLASSGDSSPARERSSLSLAAMKSLLLRDKEERFSTEYTKDDRVNLLIQSLFDADGNFLERNFGSGIEDITFTSLHKDIHGSPPQSLIVKISEVMGSFKAMRKMALFWCKAVTEMRQLWSEGQYIPCIPKDDIPDLHSCLLYQQFQVINCCLSRKRRRDIVTESLDYVISKASSDAELAVSQVIDPEEPLLTEDVIKETEEFVLRTGSVGAGCSQLLSDMQAFKAANPGCILEDFVRWISPPDWTENERSSDARDDTPSGDLRGQLSSRMQKEGNLWRELWETAKPMPAVRQAPLYDEDLAVEGILNYLEDILPSELFEQLFVSLVGLGLVIAESHSNFSKFFYECKDYVVASFQGGLWSEKVNDICEVYETVEAMLVNPDEVLKMFKQPETETGEISGETKRRFKRLSLKFGSNDKSSKKSTTQDSKNGQPFSTFFDRKSSLFSKKPPKPEIPTPAEKSPCPDENDCEWTLV 642
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6717810 6726209 + Bma004256.1 Bma10g00556 89619

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g00556 642 PANTHER RAB3 GTPASE-ACTIVATING PROTEIN CATALYTIC SUBUNIT 6 346 IPR045700 GO:0005096|GO:0043547
Bma10g00556 642 PANTHER RAB3 GTPASE-ACTIVATING PROTEIN CATALYTIC SUBUNIT 349 629 IPR045700 GO:0005096|GO:0043547
Bma10g00556 642 PANTHER RAB3 GTPASE-ACTIVATING PROTEIN CATALYTIC SUBUNIT 6 346 - -
Bma10g00556 642 MobiDBLite consensus disorder prediction 412 434 - -
Bma10g00556 642 MobiDBLite consensus disorder prediction 584 610 - -
Bma10g00556 642 Pfam Rab3 GTPase-activating protein catalytic subunit 356 479 IPR026147 -
Bma10g00556 642 PANTHER RAB3 GTPASE-ACTIVATING PROTEIN CATALYTIC SUBUNIT 349 629 - -
Bma10g00556 642 MobiDBLite consensus disorder prediction 582 642 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g00556 K18270 RAB3GAP1; Rab3 GTPase-activating protein catalytic subunit - csv:101202869 783.867
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma10g00556 Bma-Chr10:6717810 Bma14g00555 Bma-Chr14:5974238 1.35E-23 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g534 . . . . . . Bma10g00556 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1155 Cone15ag1172 . . . . Blo07g00898 . Bda05g00713 . . Bpe03g00786 . . . . . . . . . Cpe14g00745 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003785 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 7 5 1 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma10g00556 Bma_Chr10 FPKM 14.264511 13.110073 12.597701 15.01433 15.963054 15.890493 16.106531 44.993595 44.551571 44.828629