Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g00563 ATGGAGAGAATTAATTTGGAAAACAATCGTTTGAGATACATGCTCAATCAGATGAGTAACAATTATAACACCCTTCAGATGCAGCTTCTTGCTCTCACGCAGAAGCAACAAATTAACAAAGATCATGAACAATTCAAACGTCACGAGATGATTAGTGAACGATCTGAGGAAGATAATAAGAACAACGAAGGAAGTGGAAAATTTACTGGAAAATTGATGGATTTGGTTCGTCAAAAAGATGATCAAATTTCAAATTCTTCTTCAGAAACAAAGTCTGCTGAAAGTTTTGGGACTCCAAAAGAAAATCACATGGCGTTTAAAATTCACAGCACAAGTGAGGAAGGTTTGGAGAGGGTGGATAATAATGAGAAAGAAAGTAGGGTTAGTGAGAGAAATGTAGGAGAGGAAAGCTCAAACCAAGCTGCTATTTCATGGCAACTGCCTAACAATGCAGATCGGCCATCCGAATCGATGATGATGATAAAGAAAGCTCGAGTATCGGTCCGAGCACGGTCTGAGACTTCCATGATATCAGATGGGTGTCAATGGAGGAAGTATGGACAGAAAATGGCAAAAGGGAATCCATGTCCTCGAGCTTATTATCGATGTACAATGGGAGTTAATTGCCCCGTTCGAAAGCAAGTACAAAGAAACGCAGAAGATCAAACGATTCTGATAACCACGTACGAAGGGCAGCACAACCATCTTCTTCCTCAAGCGGCAATGGCTATGGCCACAACCACTTCAGCCGCCGCATCAATGCTCCTCTCTGGTCCAATGGCTAGCCTAGATGGCTCAATAAACCCAACACCTTTTGCTAGATCCATGCTTAACTTCTCACCAAATTTAGCCACCCTTTCAGCTTCAGCCCCGTTTCCTACTGTCACGTTAGATCTCACTAACAGAGCACAAGATCTTACCCAAAATTCCTTATCTTTCCCAGAAAATGTTTCTCGGTTTCCGGGCTCCGAAATGTCCAGTCTTGGACATGGTCGGACTCAGATGCCTTCATTGGCGGATACAGTTAGCGCAGCCACTGCTGCCATTACAGAAGACCCTAATTTGAGAGCAGCTCTTGTGGCTGCCATTTCCTCAGTCATCGGAAACGCTCCGTTGAGCAGGAATATTAGTAGTTCCAGAAACAATGATGAATAA 1155 43.12 MERINLENNRLRYMLNQMSNNYNTLQMQLLALTQKQQINKDHEQFKRHEMISERSEEDNKNNEGSGKFTGKLMDLVRQKDDQISNSSSETKSAESFGTPKENHMAFKIHSTSEEGLERVDNNEKESRVSERNVGEESSNQAAISWQLPNNADRPSESMMMIKKARVSVRARSETSMISDGCQWRKYGQKMAKGNPCPRAYYRCTMGVNCPVRKQVQRNAEDQTILITTYEGQHNHLLPQAAMAMATTTSAAASMLLSGPMASLDGSINPTPFARSMLNFSPNLATLSASAPFPTVTLDLTNRAQDLTQNSLSFPENVSRFPGSEMSSLGHGRTQMPSLADTVSAATAAITEDPNLRAALVAAISSVIGNAPLSRNISSSRNNDE 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7043915 7045758 - Bma004268.1 Bma10g00563 89626

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g00563 384 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 1 370 IPR044810 GO:0003700
Bma10g00563 384 MobiDBLite consensus disorder prediction 79 97 - -
Bma10g00563 384 SUPERFAMILY WRKY DNA-binding domain 170 238 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bma10g00563 384 MobiDBLite consensus disorder prediction 49 64 - -
Bma10g00563 384 MobiDBLite consensus disorder prediction 49 155 - -
Bma10g00563 384 ProSiteProfiles WRKY domain profile. 172 238 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma10g00563 384 PANTHER WRKY TRANSCRIPTION FACTOR 6-LIKE 1 370 - -
Bma10g00563 384 MobiDBLite consensus disorder prediction 133 153 - -
Bma10g00563 384 SMART WRKY_cls 177 237 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma10g00563 384 Coils Coil 1 35 - -
Bma10g00563 384 Pfam WRKY DNA -binding domain 179 235 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma10g00563 384 MobiDBLite consensus disorder prediction 106 132 - -
Bma10g00563 384 Gene3D WRKY domain 162 239 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g00563 - - - sind:105167998 314.694
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00818 Bma-Chr3:7586366 Bma10g00563 Bma-Chr10:7043915 5.15E-47 dispersed
Bma10g00563 Bma-Chr10:7043915 Bma12g00813 Bma-Chr12:37749618 1.17E-50 dispersed
Bma10g00854 Bma-Chr10:15358132 Bma10g00563 Bma-Chr10:7043915 4.99E-29 dispersed
Bma12g00408 Bma-Chr12:9040955 Bma10g00563 Bma-Chr10:7043915 4.94E-09 dispersed
Bma10g00563 Bma-Chr10:7043915 Bma08g00644 Bma-Chr8:40567513 1.53E-89 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g540 . . . . Bpe09g00165 . Bma10g00563 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo07g00896 . Bda05g00712 Bda12g00922 . Bpe03g00784 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016612 2 0 1 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 7
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57935 PF03106 WRKY 4.60E-24 CL0274 Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma10g00563 Bma_Chr10 FPKM 0.420373 0.535972 9.553826 7.180207 2.217782 2.427725 2.558621 2.135104 2.311771 3.064244