Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g00566 ATGGATCAATCTATCTATCTCTTCGATCCAAGCAGCAGATGTTCATTCGCATTGCTGGCAGATCTCCCGACCACTTCCGCCTCCTCGCCGGAAATGGAACACTCTGTGCGAGAGGTGGAACGAATCGCTGGCTACAGTTTCCGGAATAAGAAGCTTCTAGAGGAGGCTCTTACTCACTCCTCCTGTCCAGACTCCCCGTCTTACCAGCGGCTTGAGTTCGTCGGAGACGCAGTTCTCGCCATCGCTGTCAGCAACTATATTTTCCTTGCCTACCCGGAACTTGAGCCAGGTCACCTCACTCCGCTTAGGGCGGCCAATATCAGCACAGAAAAACTTGCAAGGGTAGCTGTGCGCCATGGTTTATATAAATACGTGAAGCGCAATGCCGCCGCACTGGATGATAGGGTTCGAGAGTTTACAAATGCAATTTGTAAAGAAGGTAACGCAGTTGCACATGGTGGGTCGATGAAGGCTCCTAAGGTTCTCGCCGACATCGTAGAGTCTTTGGCAGCTGCTATTTACATGGACTTGAACTTTGATTTACATAGAATGTGGTTGATTTTTAAGCATCTGTTGGAACCTTTTGTTACCCCTGAAGACTTGCAGCAGCAACCACAACCCGTCTCCCGGCTTCTCGAGCTTTGCCAAAAGCATGGAAAACAAGTGGATATTAGGTATTGGAAGAGCGATAACAAGAGCACTGCAAGTATATATGTGGATGATAAATTTATTATATCAGCTTCATCAGACCAAAAGGATATCGCAAAGCTTAATGCTTGCAAAGCTGCTTTGGAAATGTTGTCGGAATACGCTTTGCTAAATTATGAAAATAGTGGAACACTCAATCAAATCGATGGATCTTTCGAGATTGATAAGGCAAAACACATATTAAATGAGATTTGTTCCAAGAGAAAGTGGCCGAAACCAAATTACAGCATTGAGAAGGACAGAGGGCCATCACACGAGAAGAAATTCGTATCATCGGTGCAAATTGCTTCCACCGAGGGCATTCTTTGTATGATTGGAGACGAAAAGTCACGAGTAAAGGATGCTGATAATTCTGCTGCCTCCCTGATGATCCGAGCCTTACAAGAAGGTAACTATTTATAA 1110 45.23 MDQSIYLFDPSSRCSFALLADLPTTSASSPEMEHSVREVERIAGYSFRNKKLLEEALTHSSCPDSPSYQRLEFVGDAVLAIAVSNYIFLAYPELEPGHLTPLRAANISTEKLARVAVRHGLYKYVKRNAAALDDRVREFTNAICKEGNAVAHGGSMKAPKVLADIVESLAAAIYMDLNFDLHRMWLIFKHLLEPFVTPEDLQQQPQPVSRLLELCQKHGKQVDIRYWKSDNKSTASIYVDDKFIISASSDQKDIAKLNACKAALEMLSEYALLNYENSGTLNQIDGSFEIDKAKHILNEICSKRKWPKPNYSIEKDRGPSHEKKFVSSVQIASTEGILCMIGDEKSRVKDADNSAASLMIRALQEGNYL 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7073860 7076797 + Bma004271.1 Bma10g00566 89629

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g00566 369 PANTHER RIBONUCLEASE 3-LIKE PROTEIN 2-RELATED 37 360 - -
Bma10g00566 369 ProSitePatterns Ribonuclease III family signature. 69 77 IPR000999 GO:0004525|GO:0006396
Bma10g00566 369 CDD RIBOc 51 201 IPR000999 GO:0004525|GO:0006396
Bma10g00566 369 Pfam Ribonuclease III domain 69 176 IPR000999 GO:0004525|GO:0006396
Bma10g00566 369 Gene3D - 199 271 - -
Bma10g00566 369 Gene3D - 298 365 - -
Bma10g00566 369 SUPERFAMILY dsRNA-binding domain-like 160 271 - -
Bma10g00566 369 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 206 269 IPR014720 -
Bma10g00566 369 PANTHER DICER-RELATED 37 360 - -
Bma10g00566 369 SUPERFAMILY dsRNA-binding domain-like 293 363 - -
Bma10g00566 369 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 292 364 - -
Bma10g00566 369 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 292 365 IPR014720 -
Bma10g00566 369 SMART riboneu5 51 201 IPR000999 GO:0004525|GO:0006396
Bma10g00566 369 SMART DRBM_3 207 268 IPR014720 -
Bma10g00566 369 SMART DRBM_3 293 364 IPR014720 -
Bma10g00566 369 Gene3D Ribonuclease III domain 24 198 IPR036389 GO:0004525|GO:0006396
Bma10g00566 369 Pfam Double-stranded RNA binding motif 207 267 IPR014720 -
Bma10g00566 369 ProSiteProfiles Ribonuclease III family domain profile. 36 178 IPR000999 GO:0004525|GO:0006396
Bma10g00566 369 SUPERFAMILY RNase III domain-like 33 197 IPR036389 GO:0004525|GO:0006396
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g00566 - - - cit:102617758 459.529
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma10g00566 Bma-Chr10:7073860 Bma12g00142 Bma-Chr12:2033054 1.76E-34 dispersed
Bma10g00559 Bma-Chr10:7018608 Bma10g00566 Bma-Chr10:7073860 0 wgd
Bma10g00566 Bma-Chr10:7073860 Bma08g00650 Bma-Chr8:40723846 1.26E-53 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g551 . . . . . . Bma10g00566 . Cmo16g00936 . . . . . . . . . . . . . . . Cla10g00491 Cam10g0482 Cec10g0500 Cco10g0486 Clacu10g0502 Cmu10g1329 Cre10g0732 . . . . . Csa03g00495 . Cme06g02859 Blo07g00892 . Bda05g00709 . . Bpe03g00781 . . Sed08g1364 . . . Cma16g00900 . Car16g00876 Cpe14g00724 . Bhi11g00594 Tan01g1726 Cmetu06g2572 . Hepe06g0003 . . . . . . . . . Lsi05g00580 . Chy06g01831 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004196 1 1 1 2 2 1 1 1 1 2 1 1 1 2 2 1 1 2 1 1 4 2 1 0 1 1 0 3 3 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma10g00566 Bma_Chr10 FPKM 21.270452 23.343613 18.713289 19.450508 6.201171 8.317396 7.304934 43.334206 44.008781 43.011993