Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g00567 ATGAACAAGCTGAAGAAATCTCAGATTCTGATGCTTTCTGTGCTGGCTGTGTTTCTTACAATCACTCCTCTTTTGTCCTCATCCCTAAGGCCTACCTATCTCTACTTTGTTTTCAATCTTCTCATCATAGCTCTGGGAGCTGAAGCTGGCCTCCTCTCAGCCTTCTCCAATTCTTCAGACGACAAAAAGTCTCCCTCTCCCTCTCCTCCTCCTCATCTTTCTTCTTCAAATCCTGCAGCCATGGCAGAACATGCCGGAGAGAAGGACAGGTTTCATCTTTCTTCTCCAGATCAGACCTCCGACAAAAAAGTGAAGAGTTTTGAGAAATCTGGTTCGGAAAAAGTAGTGAGTAGTCACCAGAAAGTGAAGAAATGTCCTTCTACTCCAAGTCTGTTCTTCATTGGAGGTGGGGGAGAGGAAGACGAAGACGAAGAGGCAATAGAAGAAGAAACTGGAGGGATTAATGGGCAAGAGCTCTTCACCAAAGCTGAGACGTTTATTGGAAACTTTTACAAACAGTTGAAGATGCAGAGAGAAGAATCGTGGAAAAAAATTCATGGGTTTTATCAGAAAGCCTTTTAA 582 43.47 MNKLKKSQILMLSVLAVFLTITPLLSSSLRPTYLYFVFNLLIIALGAEAGLLSAFSNSSDDKKSPSPSPPPHLSSSNPAAMAEHAGEKDRFHLSSPDQTSDKKVKSFEKSGSEKVVSSHQKVKKCPSTPSLFFIGGGGEEDEDEEAIEEETGGINGQELFTKAETFIGNFYKQLKMQREESWKKIHGFYQKAF 193
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7078982 7079563 - Bma004272.1 Bma10g00567 89630

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g00567 193 MobiDBLite consensus disorder prediction 83 112 - -
Bma10g00567 193 MobiDBLite consensus disorder prediction 56 112 - -
Bma10g00567 193 Pfam Cotton fibre expressed protein 157 187 IPR008480 -
Bma10g00567 193 PANTHER OS01G0532300 PROTEIN 1 191 - -
Bma10g00567 193 PANTHER OS01G0532300 PROTEIN 1 191 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g00567 - - - tcc:18593453 181.8
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma10g00560 Bma-Chr10:7023548 Bma10g00567 Bma-Chr10:7078982 9.73E-136 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g553 . . . . . . Bma10g00567 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone15ag1178 . Csa03g00493 . Cme06g02856 . . Bda05g00708 . . Bpe03g00780 . . . . . . . . . Cpe14g00723 . . . . . . . . . . . . . . . Lsi05g00578 . Chy06g01833 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012676 1 0 0 2 2 1 1 1 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 1 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma10g00567 Bma_Chr10 FPKM 1.971452 2.42253 3.439165 4.678252 2.247052 2.246744 2.941256 1.259037 1.053798 0.995969