Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g00572 ATGAGGAAAGGAAGGGGATCGGCCGTTGCTCGGCCGGTGGCTTCTCCACTCGCCGTAGCGGGAGAATCGGCTGTGCCTCTTGGAAAATCGGTGGCCGCGGGATCGATTTCGAGGAATATTCTGGCGAAAGAGCCCAGATACAGAGGTGTGAGGAAAAGGCCGTGGGGGAGATTCGCCGCTGAGATCAGAGACCCCTGGAAAAAGACTAGAGTGTGGCTTGGGACTTTCGATTCGGCCGAGGATGCGGCCCGTGCCTACGATGCTGCCGCTCGGACGCTCCGTGGTCCGAAGGCGAAAACTAATTTTTCTCTTTCGAATCCTAATTTTCTTGATTTTCCTTATCGCCATAACGCGATCGTTCCAAATAACGTTCCCGGCCTCGATCCGTTCGTTGATCGTCGGTTTTACGGTGGAAATGGCTTCCAAGAACACCAGATTAATCCGCACAGACCGACCTCTAGCAGTTTGAGCTCCACCGTTGAGTCTTTCAGTGGGCCTAGACCTCGATCGGCGACCTTGACAGCTCCAACGACAGCGTCGGCCTCAGCCTTGCGGCGGCACCCTCGTACACCGCCTGTGTCGCCGGAAGACTGCCATAGTGATTGCGACTCGTCGTCATCAGTGATTGACGACGGGGATATCACCTCATCGTCCATGTTCCGGAAACCGATTCAAATCGACCTCAATTTCCCTCCTCTCGAAGACGGAGACTTTCCCGGTGACGATCTCCAATGTACTGCTTTATGCCTTTGA 753 54.85 MRKGRGSAVARPVASPLAVAGESAVPLGKSVAAGSISRNILAKEPRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDAAARTLRGPKAKTNFSLSNPNFLDFPYRHNAIVPNNVPGLDPFVDRRFYGGNGFQEHQINPHRPTSSSLSSTVESFSGPRPRSATLTAPTTASASALRRHPRTPPVSPEDCHSDCDSSSSVIDDGDITSSSMFRKPIQIDLNFPPLEDGDFPGDDLQCTALCL 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7101937 7102689 + Bma004277.1 Bma10g00572 89635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g00572 250 Pfam AP2 domain 45 95 IPR001471 GO:0003700|GO:0006355
Bma10g00572 250 PRINTS Ethylene responsive element binding protein signature 47 58 IPR001471 GO:0003700|GO:0006355
Bma10g00572 250 PRINTS Ethylene responsive element binding protein signature 69 85 IPR001471 GO:0003700|GO:0006355
Bma10g00572 250 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 31 230 - -
Bma10g00572 250 MobiDBLite consensus disorder prediction 139 216 - -
Bma10g00572 250 SMART rav1_2 46 109 IPR001471 GO:0003700|GO:0006355
Bma10g00572 250 MobiDBLite consensus disorder prediction 199 216 - -
Bma10g00572 250 MobiDBLite consensus disorder prediction 145 184 - -
Bma10g00572 250 CDD AP2 45 102 IPR001471 GO:0003700|GO:0006355
Bma10g00572 250 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 3-RELATED 31 230 - -
Bma10g00572 250 ProSiteProfiles AP2/ERF domain profile. 46 103 IPR001471 GO:0003700|GO:0006355
Bma10g00572 250 SUPERFAMILY DNA-binding domain 46 105 IPR016177 GO:0003677
Bma10g00572 250 Gene3D AP2/ERF domain 46 105 IPR036955 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma10g00572 Bma13g01075 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g01407 Bma-Chr2:56290047 Bma10g00572 Bma-Chr10:7101937 3.19E-42 dispersed
Bma10g00572 Bma-Chr10:7101937 Bma04g00350 Bma-Chr4:2840386 9.44E-32 dispersed
Bma10g00572 Bma-Chr10:7101937 Bma13g01075 Bma-Chr13:43608302 5.13E-102 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57937 PF00847 AP2 9.30E-15 CL0081 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g00572 K09286 - pvy:116145234 249.98