Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g00575 ATGGCTGCTTCAAAGCTCCAAGCTTTCTGGAACCACCCGGCTGGGCCTAAAACCATTCACTTTTGGGCACCAACTTTTAAATGGGGCATCGCCATAGCAAACGTGGCTGACTTCTCGAAGCCACCAGAAAAGGTTTCTTACCCACAGCAAATAGTTGTTACGATCACTGGGCTCATTTGGTCCCGTTACAGCACAGTCATAACTCCGATAAACTGGAATCTGTTCGGTGTTAGTGCAGCTATGGCTGCCACTGGTTCGTATCAAGTAGCAAGAAAAATCAAGTAA 285 47.02 MAASKLQAFWNHPAGPKTIHFWAPTFKWGIAIANVADFSKPPEKVSYPQQIVVTITGLIWSRYSTVITPINWNLFGVSAAMAATGSYQVARKIK 94
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7128773 7130112 + Bma004280.1 Bma10g00575 89638

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g00575 94 PANTHER UPF0041 BRAIN PROTEIN 44-RELATED 1 94 - -
Bma10g00575 94 Pfam Mitochondrial pyruvate carriers 6 93 IPR005336 GO:0005743|GO:0006850
Bma10g00575 94 PANTHER MITOCHONDRIAL PYRUVATE CARRIER 1 94 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g00575 K22139 MPC2; mitochondrial pyruvate carrier 2 - nnu:104606521 176.407
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma09g00644 Bma-Chr9:43870352 Bma10g00575 Bma-Chr10:7128773 6.03E-17 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g570 . . . . . . Bma10g00575 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1178 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003977 2 2 1 1 2 1 2 1 1 1 1 1 2 1 1 2 1 1 1 0 1 1 1 1 1 2 1 3 1 3 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma10g00575 Bma_Chr10 FPKM 52.37553 54.441162 45.296848 44.207062 69.058083 67.7967 63.143452 28.656004 30.335228 31.456909
Bma10g00575 Bma_Chr10 FPKM 65.746223 75.507561 75.862267 75.4095 79.60524 75.182121 79.657921 69.301201 67.537025 68.329262