Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g00578 ATGGAGCTTTGTACCGGTTGTCGTAGCTCTCAACTCTCTCAATCTCTGCTCCATTTATCCCATTTCCCTCTCTCGAAGAAATGTCTTCTCCACTTCAATCACAGAGCCTTCACTTCTCTCAAGCTTCCCTCATTTTCCACCCAATTTCACCTCCTTCTGCCACTCCATACTCGTCCAACTTCGTTTAATTTCGCTACTCTGGCTTCTTCTTCTTCTTCTTCTTCTTCGGTTGATATTCCTGAGTTAGAGAAGCTTCCGGCCGACCTCGAACTTACTGAAAGGGAGGAGCCTAATTCCAGAATTAGATTGAATGTGGGAGTTCCACCAGCTGTTTGCCAAGATTGCTACAAAGGAGTTATGAAAGAGTTCATGAAGCAAGCGAAGGTTCCTGGATTTCGCCCGGGGAAAAATGTTCCAGAGGATATTTTGGTTAATTTCATTGGGAAGAGAAATGTTGACAAGGCCATTGTTGAATCAATTCTGAAGAGAACCCTTCCGCATGCAATGGCTTCAGTGGAGGGAAGGGCATTGAGAGACTCGGTTCGTATAGCGACAAAATTTTCTGATATGGAGCAGACTTACTCTTCTCTCAATTCTCTCAGATACGACATCATTGTCGATGTTGCTCCCGAGGTCAAATGGATTCCGGAAAATGGATATAAAAAATTGAAAGTTATCGTTGAAATAGATAGTGACATCAATGCCCAGAAAGCTTCTGAACTAGAATTTAAACGACGCCACAAGGCCATTGGTATTCTCAGAATCATGACTGACAGAGAGCTGCAGCAGATTGGTGATGTTGCGGTCATTGACATATCCGCAGTAACTATTGGTCAAGATAAAACAAATGGTCAAACAATTCCATCAGCAGAGAGTAAAGGTTTCCAATTTGACACTGAAGATGGTGATAAAATCCTTCCTGGTTTTCTTAACTCGATAATTGGAATTCGGCGAGGTGAAACAAAGTCATTTCCTCTATTATTTCCGGAATCTTGGAAACAAGAAAATCTTCGAGGTGTTCATGCTCAGTTCACCGTTGAATGCAAAGAACTATTTTACAGAGATTTACCAGAGTTGGAAGACTCTCTAGCTGAGAAGCTTCTTCCTGGTTGCACCACCTTAGAACAGGTGAAAGCAGAATTGTTGAAAAAATGTGAAGAAGTGGAGCAAACAGCAAGAGAACAAGCCACAGATAATGCTATTCTTGATCAGCTTTGCAAGATGGTGGAAGTTGATATTCCTCAATCTTTGTTTGAGGAGCAAGGTAGGCAGCTTTATGGAGCTAAGCTTTTGCAAATTCAGGCAAATATCAAACTTAATGACAATCAGTTGGCTACTCTATCAAGTCCAAAGGCTGTCAACGAGTACCTCCAAGGCCAAAAAGATAACATTGTCAATGTGATAAAACAGAATCTAGCTGTTGGAGATATATTCAAACGTGAAAATTTGCAGTTTTCGACCGAAGAGCTTGTCAAAGAGGTCGAGAATTCAGTCGCTGAATTCAAACGTTATAAGCAAGAATACGACGAAGATAGTGTGAAAGAACAGGTACAAGAGATCCTAGAAGGTGCAAAGGTGCTGGAGTGGCTGAGAGAACATGCAGAGATTGAGTACATAACAAGATAA 1626 41.51 MELCTGCRSSQLSQSLLHLSHFPLSKKCLLHFNHRAFTSLKLPSFSTQFHLLLPLHTRPTSFNFATLASSSSSSSSVDIPELEKLPADLELTEREEPNSRIRLNVGVPPAVCQDCYKGVMKEFMKQAKVPGFRPGKNVPEDILVNFIGKRNVDKAIVESILKRTLPHAMASVEGRALRDSVRIATKFSDMEQTYSSLNSLRYDIIVDVAPEVKWIPENGYKKLKVIVEIDSDINAQKASELEFKRRHKAIGILRIMTDRELQQIGDVAVIDISAVTIGQDKTNGQTIPSAESKGFQFDTEDGDKILPGFLNSIIGIRRGETKSFPLLFPESWKQENLRGVHAQFTVECKELFYRDLPELEDSLAEKLLPGCTTLEQVKAELLKKCEEVEQTAREQATDNAILDQLCKMVEVDIPQSLFEEQGRQLYGAKLLQIQANIKLNDNQLATLSSPKAVNEYLQGQKDNIVNVIKQNLAVGDIFKRENLQFSTEELVKEVENSVAEFKRYKQEYDEDSVKEQVQEILEGAKVLEWLREHAEIEYITR 541
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7138988 7143373 + Bma004283.1 Bma10g00578 89641

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g00578 541 Pfam Bacterial trigger factor protein (TF) C-terminus 373 530 IPR008880 GO:0006457|GO:0015031
Bma10g00578 541 Pfam Bacterial trigger factor protein (TF) 93 227 IPR008881 GO:0006457|GO:0015031
Bma10g00578 541 SUPERFAMILY Triger factor/SurA peptide-binding domain-like 360 538 IPR027304 -
Bma10g00578 541 Gene3D - 233 536 IPR037041 GO:0006457|GO:0015031
Bma10g00578 541 Coils Coil 487 511 - -
Bma10g00578 541 Gene3D - 87 212 IPR036611 GO:0006457|GO:0015031
Bma10g00578 541 SUPERFAMILY Trigger factor ribosome-binding domain 90 225 IPR036611 GO:0006457|GO:0015031
Bma10g00578 541 Gene3D - 250 357 IPR046357 GO:0003755
Bma10g00578 541 Coils Coil 371 398 - -
Bma10g00578 541 PANTHER TRIGGER FACTOR CHAPERONE AND PEPTIDYL-PROLYL CIS/TRANS ISOMERASE 78 540 IPR005215 GO:0015031
Bma10g00578 541 PANTHER TRIGGER FACTOR-LIKE PROTEIN TIG, CHLOROPLASTIC 78 540 - -
Bma10g00578 541 Hamap Trigger factor [tig]. 89 537 IPR005215 GO:0015031
Bma10g00578 541 SUPERFAMILY FKBP-like 263 359 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g00578 K03545 tig; trigger factor - qsu:112016925 768.459
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g573 . . . . . . Bma10g00578 . . Cmo06g00892 . . . . . . . . . . . . . . Cla10g00479 Cam10g0466 Cec10g0486 Cco10g0474 Clacu10g0486 Cmu10g1314 Cre10g0718 . . . Cone15ag1194 . Csa03g00480 . Cme06g02841 . . Bda05g00697 . . Bpe03g00772 . . Sed08g2980 . . . . . . . . Bhi11g00581 Tan01g1746 Cmetu06g1014 . Hepe06g0018 . . . . . . . . . Lsi05g00567 . Chy06g01842 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011555 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 2 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma10g00578 Bma_Chr10 FPKM 67.340477 73.723083 20.522572 20.223431 8.763266 9.949701 9.801202 10.036276 8.673384 10.125989