Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g00581 ATGGCCGCTCTTCAACTGCCAAATCCGAAGGGCTTAATCTCTGCCTCTCATTTTCATCTCAAAAGCTCATCTGCTCCCCCCGTCTTTCTCAGAGAATGTTCCACTTCGCATTGTAGACGAAGGGGTTTGTCTAGAAGGCACGGTATCAACGTCGTGAGCTGTTCTTTTTCGTCAATGAACTCCGCTAGGATTAAGGTAGTGGGCGTTGGCGGTGGTGGGAACAATGCCGTCAATCGAATGATTCGCAGTGGTTTACAGGGTGTTGATTTCTATGCCATTAACACAGATGCTCAGGCGCTAGTTCAGTCTGCTGCAGAGAATCTATTACAAATTGGAGAGCTTTTGACTCGGGGTCTAGGTACTGGAGGAAATCCACTTTTAGGGGAACAAGCAGCAGAAGAATCAAAAGAAGCTATTGCAAACGCTCTGAAGGGCTCGGATCTTGTATTTATAACGGCAGGTATGGGTGGAGGTACAGGATCTGGTGCTGCACCAATTGTTGCTCAGATCGCCAAAGAGGCAGGTTATTTGACCGTTGGTGTAGTTACCTATCCATTTAGCTTTGAGGGAAGAAGAAGATCTGTGCAGGCAGGTGGATTGGAGGCGATTGAGAAGTTGCAGAAAAATGTTGATACACTAATAGTGATTCCCAATGATCGTCTGCTTGACATTGCTGATGAGCAGACTCCCCTTCAGGATGCTTTCCTTCTTGCTGATGATGTTCTACGTCAAGGCGTTCAAGGAATTTCAGACATCATTACAATACCAGGACTGGTGAATGTGGACTTCGCTGATGTAAAGGCAGTAATGAAAGACTCTGGAACTGCGATGCTTGGAGTTGGAGTTTCATCTAGCAAGAATCGTGCAGAAGAGGCTGCTGAACAAGCAACTTTGGCTCCGTTGCTTGGTTCATCTATTAGATCAGCTACTGGAGTAGTATATAACATCACTGGAGGAAAGGACATAACCTTGCAAGAAGTGAACCGAGTTTCTCAGGTTGTGACCAGTTTAGCAGATCCTTCTGCAAACATAATATTCGGGGCAGTTGTGGATGATCGATACAATGGCGAGATTCATGTAACAATAATTGCGACGGGTTTTTCGGAGTCATTTCAGAAGAATCTCTTAACAGACCCAAGGGCTGCAAAGCTGGTGGACAAAGTAGTTGGTGCAAAAGAAAGCATCCCCATAAACTCTACTTCAACTGTTTCAACCAGATCCACCACGAGACGGCTCTTCTTTTAA 1245 45.54 MAALQLPNPKGLISASHFHLKSSSAPPVFLRECSTSHCRRRGLSRRHGINVVSCSFSSMNSARIKVVGVGGGGNNAVNRMIRSGLQGVDFYAINTDAQALVQSAAENLLQIGELLTRGLGTGGNPLLGEQAAEESKEAIANALKGSDLVFITAGMGGGTGSGAAPIVAQIAKEAGYLTVGVVTYPFSFEGRRRSVQAGGLEAIEKLQKNVDTLIVIPNDRLLDIADEQTPLQDAFLLADDVLRQGVQGISDIITIPGLVNVDFADVKAVMKDSGTAMLGVGVSSSKNRAEEAAEQATLAPLLGSSIRSATGVVYNITGGKDITLQEVNRVSQVVTSLADPSANIIFGAVVDDRYNGEIHVTIIATGFSESFQKNLLTDPRAAKLVDKVVGAKESIPINSTSTVSTRSTTRRLFF 414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7151541 7154415 + Bma004286.1 Bma10g00581 89644

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g00581 414 CDD FtsZ_type1 79 366 IPR000158 GO:0003924|GO:0005525
Bma10g00581 414 TIGRFAM ftsZ: cell division protein FtsZ 58 374 IPR000158 GO:0003924|GO:0005525
Bma10g00581 414 PANTHER CELL DIVISION PROTEIN FTSZ-RELATED 33 414 IPR045061 GO:0003924|GO:0005525
Bma10g00581 414 PANTHER CELL DIVISION PROTEIN FTSZ HOMOLOG 1, CHLOROPLASTIC 33 414 - -
Bma10g00581 414 ProSitePatterns FtsZ protein signature 2. 147 168 IPR020805 GO:0005525
Bma10g00581 414 SUPERFAMILY Tubulin nucleotide-binding domain-like 62 260 IPR036525 -
Bma10g00581 414 PRINTS Cell division protein FtsZ signature 241 263 IPR003008 GO:0005525
Bma10g00581 414 PRINTS Cell division protein FtsZ signature 148 168 IPR003008 GO:0005525
Bma10g00581 414 PRINTS Cell division protein FtsZ signature 176 197 IPR003008 GO:0005525
Bma10g00581 414 PRINTS Cell division protein FtsZ signature 264 285 IPR003008 GO:0005525
Bma10g00581 414 Gene3D - 273 379 IPR037103 -
Bma10g00581 414 Pfam FtsZ family, C-terminal domain 274 367 IPR024757 -
Bma10g00581 414 ProSitePatterns FtsZ protein signature 1. 94 128 IPR020805 GO:0005525
Bma10g00581 414 Hamap Cell division protein FtsZ [ftsZ]. 59 390 IPR000158 GO:0003924|GO:0005525
Bma10g00581 414 Pfam Tubulin/FtsZ family, GTPase domain 63 225 IPR003008 GO:0005525
Bma10g00581 414 SMART Tubulin_4 63 257 IPR003008 GO:0005525
Bma10g00581 414 ProSitePatterns Tubulin subunits alpha, beta, and gamma signature. 156 162 IPR017975 GO:0005525|GO:0005874|GO:0007017
Bma10g00581 414 SMART Tubulin_C_4 259 376 IPR018316 -
Bma10g00581 414 SUPERFAMILY Tubulin C-terminal domain-like 259 375 IPR008280 -
Bma10g00581 414 Gene3D Tubulin/FtsZ, GTPase domain 55 272 IPR036525 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g00581 K03531 ftsZ; cell division protein FtsZ - zju:107434326 605.905
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma10g00581 Bma13g01095 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g01581 Bma-Chr4:51776168 Bma10g00581 Bma-Chr10:7151541 5.60E-109 dispersed
Bma10g00094 Bma-Chr10:934922 Bma10g00581 Bma-Chr10:7151541 8.27E-109 dispersed
Bma10g00581 Bma-Chr10:7151541 Bma13g01095 Bma-Chr13:43884904 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g585 . . . . . . Bma10g00581 Bma13g01095 . Cmo06g00884 . . . . . . . . . . . . . . Cla10g00460 Cam10g0446 Cec10g0469 Cco10g0457 Clacu10g0467 Cmu10g1296 Cre10g0701 Cone6ag0040 Cone9ag0046 . . . Csa03g00458 . Cme06g02820 Blo07g00880 Blo10g00853 . Bda12g00939 . . . . . . . . . . . . . Bhi11g00549 . . . . Mch10g1390 . . . . . . . . Lsi05g00545 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006787 2 1 2 2 2 1 2 1 1 1 1 1 1 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma10g00581 Bma_Chr10 FPKM 34.552803 36.735638 39.367432 37.695736 35.062992 37.328121 33.146259 30.077324 29.964279 29.481169