Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g00582 ATGGCATATTCTCAAGATTCATGGATAAAGGGATATAATGAAGCGTTAAAACTTTCTGATTGCATCAATGGAATGGTTTCCGAGCAGGCTTCCCTTCCTGCATCTGGACCAGAAGCTCAGCGTTATGCCTCTGGTGTAAGAAGGAAGATATCAATATTGAGGACAAAAATCGACAGCTTAGAGTCCCTTCTGGGAAAGCAACCTATTTCAGAGAAGGAAATGAATCGGCGCAAAGACTCACTCTTGAATTTTGGAACAGAAGTGAAACAGATGACTTCAACGTTAAACACGATGATTTTTGCCAACCGTGACAGCTTGCTTGGCCAAGAGATGAAGGAAGCCAATGCAACAAACAAGATAGTAGGATTGGACAACCCAGGGCTTATTGGCCTTCAGCGACAAATTATGAAGGCAGAGCAAGATGAAGGCCTTGAGAAGCTCCAGGAGACTGTAATCAGTACAAAACATATTGCATTGGCCGTAAATGAAGAACTCGACCTACATTCTAGGCTAATTGATGATTTGGATCAACATGTGGATGCCACTGATTCCAGACTAATGTTGGCGCAAAAGAAGCTGGCGATTTTGAATAAGCGCATAAAGCAAGGCTGCTTGTGCAAGTGCATGCTATTATCCATCGTCGGGATCATCGCTTTGATGGTTGCCATGTGGTTACTCATCAAATACTTGTAA 693 42.86 MAYSQDSWIKGYNEALKLSDCINGMVSEQASLPASGPEAQRYASGVRRKISILRTKIDSLESLLGKQPISEKEMNRRKDSLLNFGTEVKQMTSTLNTMIFANRDSLLGQEMKEANATNKIVGLDNPGLIGLQRQIMKAEQDEGLEKLQETVISTKHIALAVNEELDLHSRLIDDLDQHVDATDSRLMLAQKKLAILNKRIKQGCLCKCMLLSIVGIIALMVAMWLLIKYL 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7155146 7156808 - Bma004287.1 Bma10g00582 89645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g00582 230 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 134 196 IPR000727 -
Bma10g00582 230 SUPERFAMILY SNARE fusion complex 130 195 - -
Bma10g00582 230 PANTHER SYNTAXIN 4 223 IPR045242 -
Bma10g00582 230 Gene3D - 138 198 - -
Bma10g00582 230 SMART tSNARE_6 129 196 IPR000727 -
Bma10g00582 230 PANTHER TARGET SNARE COILED-COIL DOMAIN-CONTAINING PROTEIN-RELATED 4 223 - -
Bma10g00582 230 CDD SNARE_Qc 137 194 - -
Bma10g00582 230 Pfam SNARE domain 171 220 IPR000727 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g01292 Bma-Chr7:48531868 Bma10g00582 Bma-Chr10:7155146 3.05E-06 dispersed
Bma10g00582 Bma-Chr10:7155146 Bma14g00320 Bma-Chr14:3997555 9.17E-77 dispersed
Bma10g00582 Bma-Chr10:7155146 Bma07g01281 Bma-Chr7:48477958 2.83E-89 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g00582 K08503 - cit:102608030 321.627