Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g00587 ATGTATGATCATAACACGCAAAGGCCTAGGGGTTTTGGATTCATAACTTTTGACTCAGAAGAAGCGGTGGACAGAGTTTTACACAAATCATTTCACGAACTTTACGGTAAGATGGTTGAGGTCAAAAGGGCAGTCCCAAAAGAGCTCTCTCCAGGGCCGAACCGAAGTCCATTGGCAGGACATAGTTATGGTTTGAATAGAGCAAATAGTTTACTAAATAGTTATGCGCGGGGTTATAATGTAGGTTCTGTTGGAGGTTTTGGAATTCGAATGGACAGGTTCAGTCCAACAGCAAATGTACGTTCTGGCTTTTCTACATTTGGTACTTCTAATTATGGAATAGGCCTGACCTCCGACCCAGGATTGAGTCCAAGCTATGGAAGAAGTGCCAACTTTGGTAATATAGGGAATGGACAGGCAATGAACTCTTATTACAATTGCAGTCCTGGTAGATACACGACACCCGTTGGATTTAACGGGGGCATTGGAAGGAATGATGCAATCTTAAACTCAACAGCTCGGAATCTTTGGGGAAATGGGGTGTTAACTGGTTCGATCAATTCGTCTGTTTCTGGTCCTGATGGTGCATTTTTGGGATCTGGAAATGGGAGTTTTGGAGGGACATTTGGCAATAATGGACAGAATTGGAGTTCTTCAGTTGTTTCTCAAGGTGGCGTTAAAGCTAGCAACGGATATGGAAATGGAGAAAAAAACTTTGGGTTCGGCTACGGAAGAAATAGTAATCCAGGCACAATCCCAAACTCTCCGTTTTCTGCAGCAGCTGCTTCTTTTGGGGACTTGTACAATGGGAGTTCAGTTTATGGGGGCTCAAATTGGGAATCTGGAACTCATGACCTTGAAGACACTGAAACTTTTGGATATGACCTTGGTAACATAACTTCTGATGTCTCGGCAAATAGTTCCGAAAATTTTATCGGAAATTACAATGTTTCAAGTAGACAGTCTAGTAGAGGAATTGCTGCGTAG 987 42.76 MYDHNTQRPRGFGFITFDSEEAVDRVLHKSFHELYGKMVEVKRAVPKELSPGPNRSPLAGHSYGLNRANSLLNSYARGYNVGSVGGFGIRMDRFSPTANVRSGFSTFGTSNYGIGLTSDPGLSPSYGRSANFGNIGNGQAMNSYYNCSPGRYTTPVGFNGGIGRNDAILNSTARNLWGNGVLTGSINSSVSGPDGAFLGSGNGSFGGTFGNNGQNWSSSVVSQGGVKASNGYGNGEKNFGFGYGRNSNPGTIPNSPFSAAAASFGDLYNGSSVYGGSNWESGTHDLEDTETFGYDLGNITSDVSANSSENFIGNYNVSSRQSSRGIAA 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7213464 7215084 - Bma004294.2 Bma10g00587 89650

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g00587 328 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 328 - -
Bma10g00587 328 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 46 IPR000504 GO:0003723
Bma10g00587 328 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 328 - -
Bma10g00587 328 SUPERFAMILY RNA-binding domain, RBD 1 113 IPR035979 GO:0003676
Bma10g00587 328 Gene3D - 1 48 IPR012677 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g00587 K14411 MSI; RNA-binding protein Musashi - mnt:21392838 375.17
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma10g00587 Bma13g01106 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma10g00587 Bma-Chr10:7213464 Bma13g00725 Bma-Chr13:21382933 2.31E-07 dispersed
Bma10g00587 Bma-Chr10:7213464 Bma08g00673 Bma-Chr8:41775966 1.09E-07 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g609 . . . . Bpe09g00137 . Bma10g00587 Bma13g01106 Cmo16g00980 Cmo06g00879 . . . . . . . . . . . . . . Cla10g00435 Cam10g0434 Cec10g0456 Cco10g0445 Clacu10g0442 Cmu10g1273 Cre10g0689 Cone6ag0030 Cone9ag0029 Cone14ag1200 Cone15ag1220 . Csa03g00443 . Cme06g02800 Blo07g00874 . Bda05g00687 Bda12g00948 . Bpe03g00761 . . . . . . Cma16g00941 . Car16g00905 Cpe14g00765 . Bhi11g00503 Tan01g1803 . . . . . . . . . . . . Lsi05g00527 . Chy06g01874 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003655 1 5 1 1 2 1 2 1 1 1 1 1 2 1 1 2 1 4 1 1 1 1 1 1 1 1 0 4 3 2 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma10g00587 Bma_Chr10 FPKM 3.885423 4.457516 18.5212 17.99032 5.683879 4.768534 5.239111 1.566049 1.760319 1.416698