Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g00588 ATGGGCTCTACTGTTGCTGGGTCCGAGCAGAATCGAATCACCGATGGAGATGTTCCCGGCGATCCGAATGGGACTGAGTTTCCGGATTGCGTAGAAGCTCGCTCTACTCTTATAGGCGGCGCTAGGTACAAGCTGATGACTCCGGCGAAGCTTCCGATCTCTAGGGCTACTTGCATTACGATCCCACCGGGGCACAGCCCTTCTTCATTTTTGGAGTCTCCCGTTCTGCTCACTAACATGAAGGTTGAGCCTTCTCCTACCACTGGCTCCTTTATAAAGTCTCATATGGTTCATGGCTATTCCAGTTCAGATGAAGGGAAATCCAGCAACTTTGACTCAAAGCCACATATAAAAGCGAATATGGTTTCTGCAGATCTGAACGGCCATAGAAGTGAACAATCTGTCCAAGTCCAGGTTCATGGAGTGAGTTGTCCAGCTGAGTTAAATGCCGATGAAATTAATCAGAGAATCCTTGAAAATACTGAAGTTCAACCCACATCGTTCGATCATAAAGGAACTGGGGTTTCGATTGTTGCCGATAGGTCATCTGACGATGGATATAACTGGAGAAAATACGGACAGAAACACGTTAAAGGGAGTGAATTTCCTCGCAGCTATTACAAATGTACTCATCCTAACTGTGAAGTGAAAAAGTTGTTTGAACGCTCTCTCAATGGACAAATAACTGAGATTATCTACAAGGGTACCCATGATCATCCCAAACCTCAGCCAAGTCGACGATATATGTCTGCTAACGTAATGTCCATGCAAGAAGGAAGATTTGATAAGCCCGCATCCTTAACAGGACAAGACGCTAACAAGTATGGTTATATTTCACATTCTGTCGAGCCAAATGATTCTTCCGAGCATTCTCTTATCATAGCTAATGATGATGGTATCGAAGGCTCTGGTTCTTTCCCGAACAGAAACCTTGATGAAGCTGATGATGACGATCCTTTCTCCAAGCGGAGGAGAATGGAAGCTGGTGGATTTGACGTCACTCCAGTTATTAAACCGGTAAGAGAACCACGTGTAGTTGTTCAAACTTTGAGCGAGGTTGATATACTCGATGATGGCTACCGCTGGCGCAAATACGGGCAGAAAGTGGTGAGAGGAAATCTAAATCCAAGGAGTTATTACAAGTGCACAAATTTGGGATGTCATGTGAGAAAACACGTGGAAAGAGCATCCCATGATCTAAAGGCTGTGATAACCACATATGAAGGGAAACACAACCATGATGTTCCGGCTGCAAAATCTAGTAGCCACGACACTGCTGGCCTGTCCTTGATGGGAGGAAGACCATCCAAGTTCAGATCAGAAGAAGGTGATGCTATTAGCCTCGATCTTGTGGTCGGATCAAATGACTACGGCCAAACAGCGCAATACGAGCCTTCCCATCGTCAACCTCTGAGCAGCACGGCCAATTTTCGGGTAGTTCAAGCAAAGCCCATCTCTATGCATTTCGGTGTTATAAATGGTGGCATAAATCAATACGGATTGAGAGAAAACGAGGGTACTCCGTTGAACCATTCGGCTTACTCTTATCCTCAGAATATCGGAAGAATATTAACTGGTCCTTGA 1584 45.2 MGSTVAGSEQNRITDGDVPGDPNGTEFPDCVEARSTLIGGARYKLMTPAKLPISRATCITIPPGHSPSSFLESPVLLTNMKVEPSPTTGSFIKSHMVHGYSSSDEGKSSNFDSKPHIKANMVSADLNGHRSEQSVQVQVHGVSCPAELNADEINQRILENTEVQPTSFDHKGTGVSIVADRSSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSLNGQITEIIYKGTHDHPKPQPSRRYMSANVMSMQEGRFDKPASLTGQDANKYGYISHSVEPNDSSEHSLIIANDDGIEGSGSFPNRNLDEADDDDPFSKRRRMEAGGFDVTPVIKPVREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNLNPRSYYKCTNLGCHVRKHVERASHDLKAVITTYEGKHNHDVPAAKSSSHDTAGLSLMGGRPSKFRSEEGDAISLDLVVGSNDYGQTAQYEPSHRQPLSSTANFRVVQAKPISMHFGVINGGINQYGLRENEGTPLNHSAYSYPQNIGRILTGP 527
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7220605 7223911 + Bma004295.1 Bma10g00588 89651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g00588 527 SUPERFAMILY WRKY DNA-binding domain 348 416 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bma10g00588 527 Gene3D WRKY domain 175 243 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bma10g00588 527 Gene3D WRKY domain 341 417 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bma10g00588 527 SUPERFAMILY WRKY DNA-binding domain 181 242 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bma10g00588 527 SMART WRKY_cls 183 241 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma10g00588 527 SMART WRKY_cls 356 415 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma10g00588 527 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 143 457 IPR044810 GO:0003700
Bma10g00588 527 PANTHER WRKY TRANSCRIPTION FACTOR 20 ISOFORM X1-RELATED 31 139 - -
Bma10g00588 527 ProSiteProfiles WRKY domain profile. 351 416 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma10g00588 527 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 31 139 IPR044810 GO:0003700
Bma10g00588 527 MobiDBLite consensus disorder prediction 1 26 - -
Bma10g00588 527 ProSiteProfiles WRKY domain profile. 184 242 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma10g00588 527 MobiDBLite consensus disorder prediction 303 323 - -
Bma10g00588 527 PANTHER WRKY TRANSCRIPTION FACTOR 20 ISOFORM X1-RELATED 143 457 - -
Bma10g00588 527 Pfam WRKY DNA -binding domain 357 413 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma10g00588 527 Pfam WRKY DNA -binding domain 184 240 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma10g00588 Bma13g01107 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma10g00588 Bma-Chr10:7220605 Bma13g00171 Bma-Chr13:1999694 5.68E-85 dispersed
Bma15g00141 Bma-Chr15:1491371 Bma10g00588 Bma-Chr10:7220605 4.54E-78 dispersed
Bma01g01196 Bma-Chr1:13603229 Bma10g00588 Bma-Chr10:7220605 2.98E-15 transposed
Bma07g00043 Bma-Chr7:1350892 Bma10g00588 Bma-Chr10:7220605 2.15E-14 transposed
Bma10g00638 Bma-Chr10:8786790 Bma10g00588 Bma-Chr10:7220605 1.95E-86 transposed
Bma11g00064 Bma-Chr11:758234 Bma10g00588 Bma-Chr10:7220605 7.97E-14 transposed
Bma13g01146 Bma-Chr13:44637853 Bma10g00588 Bma-Chr10:7220605 1.19E-87 transposed
Bma10g00588 Bma-Chr10:7220605 Bma13g01107 Bma-Chr13:44028849 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57939 PF03106 WRKY 4.60E-23 CL0274 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g00588 - - qsu:112006109 638.262