Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g00590 AGCAATCTCCCCAAAGGAACCACCGCCGCAAACGGAAAGGACCGGGCGGAGCAGTGCGCGGTGCGGGAGCAGGACCAGTACATGCCCATCGCAAACGTCATACGCATTATGCGCCGGATCCTACCCTCGCACGCCAAGATTTCAGACGACGCCAAAGAGACGATCCAAGAGTGCGTGTCGGAGTACATAAGCTTCATCACCGGCGAGGCCAACGAGCGGTGCCAGCGGGAGCAGAGAAAGACTGTGACGGCGGAGGACGTGCTCTGGGCGATGGGGAAGTTGGGGTTCGACGACTACGTGGAGCCGCTCACTGTTTACCTGAGCAGATACCGGGAGACGGAGAACGAAAGGACTCGGGTGGAGCCCCTTTTGAGGCGTGGGTCGGGAGATTATGGGCCTCCGGTTGGGATTGTTAGTGGGTACGGGCCGGGTTATCAAGTTGGGTATTTTGATCCCATGGGTGGGTGTTATGGTGGGTCAGGTGGTGGGTCTTCTTCTGCTGCAGGTGGATTTGACCCATTTCCTCCCTTTAAATGA 537 58.1 SNLPKGTTAANGKDRAEQCAVREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDDYVEPLTVYLSRYRETENERTRVEPLLRRGSGDYGPPVGIVSGYGPGYQVGYFDPMGGCYGGSGGGSSSAAGGFDPFPPFK 178
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7262662 7263198 + Bma004297.1 Bma10g00590 89653

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g00590 178 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 8 128 IPR027113 GO:0001228|GO:0006355|GO:0016602
Bma10g00590 178 ProSitePatterns NF-YB/HAP3 subunit signature. 58 74 IPR003956 GO:0005634|GO:0006355|GO:0043565
Bma10g00590 178 PRINTS CCAAT-binding transcription factor subunit A signature 55 73 - -
Bma10g00590 178 PRINTS CCAAT-binding transcription factor subunit A signature 93 111 - -
Bma10g00590 178 PRINTS CCAAT-binding transcription factor subunit A signature 74 92 - -
Bma10g00590 178 SUPERFAMILY Histone-fold 24 120 IPR009072 GO:0046982
Bma10g00590 178 Gene3D Histone, subunit A 14 128 IPR009072 GO:0046982
Bma10g00590 178 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 8 128 - -
Bma10g00590 178 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 28 91 IPR003958 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g00590 K08065 NFYB, HAP3; nuclear transcription Y subunit beta - csv:116402762 236.498
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma10g00590 Bma14g00682 CCT
Bma10g00590 Bma13g01113 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma10g00590 Bma-Chr10:7262662 Bma12g00846 Bma-Chr12:39281855 1.16E-48 dispersed
Bma14g00951 Bma-Chr14:10825725 Bma10g00590 Bma-Chr10:7262662 4.71E-55 transposed
Bma10g00590 Bma-Chr10:7262662 Bma13g01113 Bma-Chr13:44263196 1.70E-47 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g659 . . Bda07g00410 . Bpe09g00129 . Bma10g00590 Bma13g01113 . Cmo06g00687 . . . . . . . . . . . . . . . . . . . . . . . Cone8ag1366 Cone12ag1312 . Csa03g00427 . . . Blo10g00864 . Bda12g00962 Bpe11g00587 . . Bma14g00682 . . . . . . . . . Bhi11g00479 . . . . . . . . . . . . . Lsi05g00494 . Chy06g01888 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma10g00590 BCT,CCT 2 117 CCAAT-HAP3 Transcription Factor Family AT5G47670 80.2 3.1e-48 188.7
Bma14g00951 . 1 88 CCAAT-HAP3 Transcription Factor Family AT5G47670 93.2 2.3e-43 172.6
Bma02g01299 . 7 116 CCAAT-HAP3 Transcription Factor Family AT5G47670 62.3 3.2e-37 152.1
Bma12g00846 . 21 116 CCAAT-HAP3 Transcription Factor Family AT5G47670 69.8 5.5e-37 151.4
Bma10g00590 BCT,CCT 19 155 CCAAT-HAP3 Transcription Factor Family AT1G21970 67.9 6.0e-47 184.5
Bma14g00951 . 1 103 CCAAT-HAP3 Transcription Factor Family AT1G21970 72.3 3.2e-40 162.2
Bma13g01113 BCT,CCT 21 149 CCAAT-HAP3 Transcription Factor Family AT1G21970 54.1 7.3e-37 151.0
Bma12g00846 . 1 128 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.8 1.9e-57 218.8
Bma02g01299 . 1 166 CCAAT-HAP3 Transcription Factor Family AT4G14540 71.2 2.1e-56 215.3
Bma13g01113 BCT,CCT 1 161 CCAAT-HAP3 Transcription Factor Family AT4G14540 72.0 1.3e-53 206.1
Bma14g00682 CCT 1 157 CCAAT-HAP3 Transcription Factor Family AT4G14540 64.8 3.7e-48 188.0
Bma08g00951 . 11 130 CCAAT-HAP3 Transcription Factor Family AT4G14540 72.5 9.3e-44 173.3
Bma08g00961 CCT,ECH 11 130 CCAAT-HAP3 Transcription Factor Family AT4G14540 72.5 9.3e-44 173.3
Bma08g01142 CCT,ECH 11 123 CCAAT-HAP3 Transcription Factor Family AT4G14540 74.3 2.7e-43 171.8
Bma04g00620 . 22 114 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.0 4.6e-43 171.0
Bma03g00997 . 22 117 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.5 7.9e-43 170.2
Bma08g00951 . 1 116 CCAAT-HAP3 Transcription Factor Family AT2G38880 81.9 3.7e-50 194.5
Bma08g00961 CCT,ECH 1 116 CCAAT-HAP3 Transcription Factor Family AT2G38880 81.9 3.7e-50 194.5
Bma04g00620 . 1 114 CCAAT-HAP3 Transcription Factor Family AT2G38880 81.6 5.4e-49 190.7
Bma08g01142 CCT,ECH 1 117 CCAAT-HAP3 Transcription Factor Family AT2G38880 78.6 7.7e-48 186.8
Bma13g01113 BCT,CCT 19 112 CCAAT-HAP3 Transcription Factor Family AT2G38880 83.0 4.4e-43 171.0
Bma12g00846 . 1 111 CCAAT-HAP3 Transcription Factor Family AT2G38880 73.0 7.5e-43 170.2
Bma02g01299 . 21 111 CCAAT-HAP3 Transcription Factor Family AT2G38880 83.5 1.7e-42 169.1
Bma14g00682 CCT 23 116 CCAAT-HAP3 Transcription Factor Family AT2G38880 81.9 3.7e-42 167.9
Bma03g00997 . 7 126 CCAAT-HAP3 Transcription Factor Family AT2G38880 65.9 1.6e-40 162.5
Bma13g01113 BCT,CCT 21 116 CCAAT-HAP3 Transcription Factor Family AT2G47810 76.0 5.3e-39 157.5
Bma14g00682 CCT 21 120 CCAAT-HAP3 Transcription Factor Family AT2G47810 72.0 9.0e-39 156.8
Bma02g01299 . 21 116 CCAAT-HAP3 Transcription Factor Family AT2G47810 72.9 5.8e-38 154.1
Bma12g00846 . 21 116 CCAAT-HAP3 Transcription Factor Family AT2G47810 72.9 7.6e-38 153.7
Bma08g01142 CCT,ECH 25 124 CCAAT-HAP3 Transcription Factor Family AT2G47810 69.0 8.4e-37 150.2
Bma04g00620 . 1 168 CCAAT-HAP3 Transcription Factor Family AT2G37060 72.6 3.8e-59 224.6
Bma08g00951 . 1 136 CCAAT-HAP3 Transcription Factor Family AT2G37060 79.9 8.7e-56 213.4
Bma08g00961 CCT,ECH 1 136 CCAAT-HAP3 Transcription Factor Family AT2G37060 79.9 8.7e-56 213.4
Bma08g01142 CCT,ECH 7 118 CCAAT-HAP3 Transcription Factor Family AT2G37060 82.5 1.3e-48 189.5
Bma14g00682 CCT 1 128 CCAAT-HAP3 Transcription Factor Family AT2G37060 67.4 2.8e-46 181.8
Bma12g00846 . 6 134 CCAAT-HAP3 Transcription Factor Family AT2G37060 69.8 1.8e-45 179.1
Bma02g01299 . 6 115 CCAAT-HAP3 Transcription Factor Family AT2G37060 78.2 3.1e-45 178.3
Bma13g01113 BCT,CCT 1 147 CCAAT-HAP3 Transcription Factor Family AT2G37060 61.4 1.5e-44 176.0
Bma03g00997 . 23 115 CCAAT-HAP3 Transcription Factor Family AT2G37060 77.4 2.2e-38 155.6
Bma12g00846 . 1 122 CCAAT-HAP3 Transcription Factor Family AT2G13570 70.5 1.3e-45 179.9
Bma02g01299 . 1 122 CCAAT-HAP3 Transcription Factor Family AT2G13570 71.3 3.9e-45 178.3
Bma03g00997 . 10 117 CCAAT-HAP3 Transcription Factor Family AT2G13570 77.8 5.6e-44 174.5
Bma14g00682 CCT 7 120 CCAAT-HAP3 Transcription Factor Family AT2G13570 70.2 9.5e-44 173.7
Bma13g01113 BCT,CCT 21 116 CCAAT-HAP3 Transcription Factor Family AT2G13570 82.3 1.1e-42 170.2
Bma04g00620 . 24 119 CCAAT-HAP3 Transcription Factor Family AT2G13570 78.1 1.7e-40 162.9
Bma08g00951 . 4 116 CCAAT-HAP3 Transcription Factor Family AT2G13570 67.3 1.1e-39 160.2
Bma08g00961 CCT,ECH 4 116 CCAAT-HAP3 Transcription Factor Family AT2G13570 67.3 1.1e-39 160.2
Bma08g01142 CCT,ECH 26 121 CCAAT-HAP3 Transcription Factor Family AT2G13570 74.0 1.1e-39 160.2
Bma13g01113 BCT,CCT 1 134 CCAAT-HAP3 Transcription Factor Family AT5G47640 75.9 9.9e-53 203.4
Bma12g00846 . 1 121 CCAAT-HAP3 Transcription Factor Family AT5G47640 80.2 9.3e-51 196.8
Bma02g01299 . 1 121 CCAAT-HAP3 Transcription Factor Family AT5G47640 80.2 3.5e-50 194.9
Bma14g00682 CCT 1 142 CCAAT-HAP3 Transcription Factor Family AT5G47640 68.3 1.6e-47 186.0
Bma08g00951 . 26 139 CCAAT-HAP3 Transcription Factor Family AT5G47640 73.7 8.4e-44 173.7
Bma08g00961 CCT,ECH 26 139 CCAAT-HAP3 Transcription Factor Family AT5G47640 73.7 8.4e-44 173.7
Bma04g00620 . 19 123 CCAAT-HAP3 Transcription Factor Family AT5G47640 76.2 9.3e-43 170.2
Bma08g01142 CCT,ECH 26 118 CCAAT-HAP3 Transcription Factor Family AT5G47640 82.8 1.0e-41 166.8
Bma03g00997 . 18 117 CCAAT-HAP3 Transcription Factor Family AT5G47640 79.0 3.0e-41 165.2
Bma04g00620 . 16 168 CCAAT-HAP3 Transcription Factor Family AT3G53340 77.5 1.6e-60 229.2
Bma08g00951 . 1 136 CCAAT-HAP3 Transcription Factor Family AT3G53340 78.3 9.8e-55 209.9
Bma08g00961 CCT,ECH 1 136 CCAAT-HAP3 Transcription Factor Family AT3G53340 78.3 9.8e-55 209.9
Bma08g01142 CCT,ECH 12 118 CCAAT-HAP3 Transcription Factor Family AT3G53340 83.3 6.8e-48 187.2
Bma12g00846 . 6 124 CCAAT-HAP3 Transcription Factor Family AT3G53340 72.3 5.4e-45 177.6
Bma02g01299 . 6 124 CCAAT-HAP3 Transcription Factor Family AT3G53340 72.3 5.4e-45 177.6
Bma14g00682 CCT 7 135 CCAAT-HAP3 Transcription Factor Family AT3G53340 65.9 1.6e-44 176.0
Bma13g01113 BCT,CCT 17 115 CCAAT-HAP3 Transcription Factor Family AT3G53340 77.9 1.1e-42 169.9
Bma03g00997 . 23 115 CCAAT-HAP3 Transcription Factor Family AT3G53340 77.4 1.3e-38 156.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006157 1 1 0 1 1 1 0 1 1 1 1 1 2 1 1 3 1 2 2 1 5 1 2 1 1 1 1 1 1 0 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57940 PF00808 CBFD_NFYB_HMF 1.70E-25 CL0012 Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma10g00590 Bma_Chr10 FPKM 8.514547 9.185643 3.770927 3.418508 13.704556 11.40202 12.28979 2.897535 2.631697 2.038355