Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g00590 AGCAATCTCCCCAAAGGAACCACCGCCGCAAACGGAAAGGACCGGGCGGAGCAGTGCGCGGTGCGGGAGCAGGACCAGTACATGCCCATCGCAAACGTCATACGCATTATGCGCCGGATCCTACCCTCGCACGCCAAGATTTCAGACGACGCCAAAGAGACGATCCAAGAGTGCGTGTCGGAGTACATAAGCTTCATCACCGGCGAGGCCAACGAGCGGTGCCAGCGGGAGCAGAGAAAGACTGTGACGGCGGAGGACGTGCTCTGGGCGATGGGGAAGTTGGGGTTCGACGACTACGTGGAGCCGCTCACTGTTTACCTGAGCAGATACCGGGAGACGGAGAACGAAAGGACTCGGGTGGAGCCCCTTTTGAGGCGTGGGTCGGGAGATTATGGGCCTCCGGTTGGGATTGTTAGTGGGTACGGGCCGGGTTATCAAGTTGGGTATTTTGATCCCATGGGTGGGTGTTATGGTGGGTCAGGTGGTGGGTCTTCTTCTGCTGCAGGTGGATTTGACCCATTTCCTCCCTTTAAATGA 537 58.1 SNLPKGTTAANGKDRAEQCAVREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDDYVEPLTVYLSRYRETENERTRVEPLLRRGSGDYGPPVGIVSGYGPGYQVGYFDPMGGCYGGSGGGSSSAAGGFDPFPPFK 178
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7262662 7263198 + Bma004297.1 Bma10g00590 89653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g00590 178 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 8 128 IPR027113 GO:0001228|GO:0006355|GO:0016602
Bma10g00590 178 ProSitePatterns NF-YB/HAP3 subunit signature. 58 74 IPR003956 GO:0005634|GO:0006355|GO:0043565
Bma10g00590 178 PRINTS CCAAT-binding transcription factor subunit A signature 55 73 - -
Bma10g00590 178 PRINTS CCAAT-binding transcription factor subunit A signature 93 111 - -
Bma10g00590 178 PRINTS CCAAT-binding transcription factor subunit A signature 74 92 - -
Bma10g00590 178 SUPERFAMILY Histone-fold 24 120 IPR009072 GO:0046982
Bma10g00590 178 Gene3D Histone, subunit A 14 128 IPR009072 GO:0046982
Bma10g00590 178 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 8 128 - -
Bma10g00590 178 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 28 91 IPR003958 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma10g00590 Bma14g00682 CCT
Bma10g00590 Bma13g01113 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma10g00590 Bma-Chr10:7262662 Bma12g00846 Bma-Chr12:39281855 1.16E-48 dispersed
Bma14g00951 Bma-Chr14:10825725 Bma10g00590 Bma-Chr10:7262662 4.71E-55 transposed
Bma10g00590 Bma-Chr10:7262662 Bma13g01113 Bma-Chr13:44263196 1.70E-47 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57940 PF00808 CBFD_NFYB_HMF 1.70E-25 CL0012 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g00590 K08065 - csv:116402762 236.498