Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g00600 ATGAGTGAGATCAGGTCCAAGTTTTCGGAGGTTTACTCGGTGTTGAAATCGGAGCTACTCGGCGACCCTGTTTTTGAATTCACCGATGGTTCCCGTCAGTGGGTGGACCGGGTACTATCTCATTCATCTCGATCGATTGCAGGAAAGCTGAACCGAGGACTTTCAGTCGTCGACAGCTATAAGTTACTGAAAGAGGGGAAAGAGTTTAGCAGTGATGAAGTGTTTCTTGCTTGTGTTCTTGGTTGGTGCGTTGAATGGTTTCAAGCTTATTTTCTCGTCCACGACGACCTAATGGACAACTCTGTAACGAGACGCGGTCAACCTTGTTGGTTCAGGGTACCCAATGTAGGTTTGATGGCTGTGATCGATGGAGTAATACTTCGGAATCACATACCTAGGATTCTCAAAAACCATTTTAGAAGGAAACCTTATTATGTTGATTTGCTGGATTTATTCAACGAGGTTGAATTCCAAACAGCTTCAGGCCAGATGATTGATTTGATCACCTCACTCGAGGGGGAGAAGGATCTCTTGAAATACTCATTACCACTCCACAATGGTATTGTTCGGTATAAAACTGCCTATTATTCATTTTATCTCCCAGTTGCGTGTGCGTTGCTTATGGCAGGAGAAAGCCTTGATGATCATGCGGATGTAAAGGGTATACTTGTAGAAATGGGAACCTATTTTCAAGTTCAGGATGATTTTCTGGACTGCTTTGGGGAGCCTGAAGTGATTGGGAAGATTGGAACAGATATTGAGGATTTCAAGTGTTCTTGGCTGGTTGTGAAAGCTCTACAACTGTCTAATGAACAACAAAAGAAGCTCTTAATTGAGAATTACGGGAAAGCAGATGAAGCATGTGCTGCCAAAGTGAAAGAGCTCTATAAAATGCTCAATCTCCAGGGGGCATTTGAGGAGTATGAGAGAACAAGTTACGAGAAGCTTATAAAATCCATTGAAGTTCATCCAAGCAAAGCAGTACAAGCAGTGCTGAAATCATTTCTAGCAAAGATACATAAGAGGCAGAAGTAG 1035 42.71 MSEIRSKFSEVYSVLKSELLGDPVFEFTDGSRQWVDRVLSHSSRSIAGKLNRGLSVVDSYKLLKEGKEFSSDEVFLACVLGWCVEWFQAYFLVHDDLMDNSVTRRGQPCWFRVPNVGLMAVIDGVILRNHIPRILKNHFRRKPYYVDLLDLFNEVEFQTASGQMIDLITSLEGEKDLLKYSLPLHNGIVRYKTAYYSFYLPVACALLMAGESLDDHADVKGILVEMGTYFQVQDDFLDCFGEPEVIGKIGTDIEDFKCSWLVVKALQLSNEQQKKLLIENYGKADEACAAKVKELYKMLNLQGAFEEYERTSYEKLIKSIEVHPSKAVQAVLKSFLAKIHKRQK 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7320045 7322353 + Bma004307.1 Bma10g00600 89663

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g00600 344 PANTHER FARNESYL PYROPHOSPHATE SYNTHASE 1-LIKE 1 344 - -
Bma10g00600 344 ProSitePatterns Polyprenyl synthases signature 2. 226 238 IPR033749 -
Bma10g00600 344 SFLD Polyprenyl Transferase Like 19 342 - -
Bma10g00600 344 PANTHER FARNESYL-PYROPHOSPHATE SYNTHETASE 1 344 IPR039702 GO:0008299|GO:0016765
Bma10g00600 344 CDD Trans_IPPS_HT 31 267 IPR000092 GO:0008299
Bma10g00600 344 Pfam Polyprenyl synthetase 33 298 IPR000092 GO:0008299
Bma10g00600 344 SUPERFAMILY Terpenoid synthases 24 343 IPR008949 -
Bma10g00600 344 ProSitePatterns Polyprenyl synthases signature 1. 92 106 IPR033749 -
Bma10g00600 344 Gene3D Farnesyl Diphosphate Synthase 1 343 IPR008949 -
Bma10g00600 344 SFLD Isoprenoid Synthase Type I 19 342 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g00600 K00787 FDPS; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10] - csin:114303254 563.533
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma10g00600 Bma13g01131 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01149 Bma-Chr1:12459997 Bma10g00600 Bma-Chr10:7320045 9.41E-06 transposed
Bma10g00600 Bma-Chr10:7320045 Bma13g01131 Bma-Chr13:44409032 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g715 . . . . Bpe09g00111 . Bma10g00600 Bma13g01131 . . Cma01g01062 . Car01g00936 . Sed11g1171 . Cpe02g00835 Bhi09g01801 Tan01g3213 Cmetu03g0372 . . Mch11g1302 . . . . . . . . . . . . . . . . . . Bda05g00674 Bda12g00981 . Bpe03g00747 . . . Cmo01g01103 . . . . . . . . . . . . . . Cla09g02095 Cam09g2181 Cec09g2248 . . . . . . Chy01g01122 Cme01g00870
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002219 2 4 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 3 2 2 2 1 2 2 2 1 2 3 5 1 63
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma10g00600 Bma_Chr10 FPKM 33.255444 29.855227 32.095253 33.293415 26.392544 26.314468 24.790773 20.969772 22.322239 19.388453