Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g00607 ATGGCGATGATCAAAGCCCCTGGTGCAAACCTTGAACCGCTTCCTCAGCCTTCCGCTCCTTTGGGTCCGGTGCCCTCTGCAGGGGTTCCTGAATTTTCAGGGCCTCCGGGTGGCCCTATAATGACCACTATCCCTATGTTGCAGGGCGTCAGTCCAGGCATCGCCTCCACTGGTCCCGTTCGAATGCCCAGCAGTAAGCTTCCGAAGGGGCGGCACCTGTTTGGTGATAGTGTTGTGTATGATGTAAATGTCAGGTTGCAAGGGGAGGTTCAGCCACAGCTTGAAGTTACTCCGATAACGAAGTACGGTTCAGATCCTCAGCTGGTCTTGGGGCGACAAATAGCCGTCAACAAGACTTACATATGCTATGGCTTGAAACAGGGAAATATTCGAGTACTTAATATTAACACTGCTCTGCGAGCTCTATTCCGGGGGCACGAAAAGAGGGTCACGGATATGGCATTTTTTGCGGAGGATGTTCACCTTTTGGCTAGTGTCGACATAGGTGGGCGAGTTTATGTATGGAAGATTTCTGAGGGCCCAGATGAAGAAGGCAAGCAACAAATCACAGGAAAAGTTGTTATCGCTATTCATATTGAACGAGAGGAGGACGTTGTTCATCCACGAATTTGTTGGCATTGTCACAAACAGGAAGTTTTGGTTGTTGGCTATGGGAAGTCTGTTTTGAGGATTGATACAACTAAAGTTGGGAAGGGTGAACAATTTACTGCCGAAGTTCCACTTAAAGTTTCTCTCGACAAGTTAATAGATGGAGTGCAGCTTGTTGGTAAACATGACAAGGAAGTGACTGAGTTGTCCATGTGCCAGTGGATGACTTCCCGTTTAGTTTCCGCTTCTATGGATGGAACGATTAAGATTTGGGATGATCGCAAAGTTCCACCACTTGTAGTATTGAAACCACATGAAGGTCAACCTGTTAATGCAGCTATCTTTTTAACTGCTCCACATCGACCAGATCACATTATTCTTATAACAGCGGGGCCTCTCAACCGAGAAGTGAAGGTTTGGTGTTCTGCGAGTGAGGAGGGGTGGCTCCTGCCTAGTGATGTTGATTCTTGGAAATGTACCCAGACACTGGAATTGAAGAGTTCAGCTGAACATCAAGTTGAAGAGACATTTTTCAATCAAGTTGTGGCATTGTCTCAGGCAGGTCTTCTTTTGGTCGCTAATGCAAAGAAAAATGCTATATATGCTGTACACATAGATTATGGCTCTAATCCTGCCAACACTCGCATGGATTACATAGCAGAGTTTACTGTCACTATGCCGATTTTGAGTTTTACTGGAACCAGTGAAATATTAGATCGTAGTACACAGATTGTTCAGGTTTATTGTGTCCAAACTCAAGCCATTCAGCAGTATGCTTTGGATTTATCCCAGTGCTTGCCTCCACCTTTGGAGAATGTCATAACAGAGAGAACAGAGTCAAATGTTTCTAACGATGCAACTAATGTTGATGGACTTGGTTTGATTTCACCTGTAAGTAAACCAAATGAGTTTCTTTTAACTGGTTCTGCAACCAAATCAGCTACATTATTAAATGACCCCGAGGGTGTTTCTACAGAAAGATATCCCATATCCTCCATTCCTCTTGAGGTGACTTCCAGTGTCAACAAAGATCCTAAACCTGTTTTACTGACATCAGCATCTAGTAATGCTGATATTGTATGTGTCCCATCACCTCCTCTACCAATGAGTCCAAGGTTATCTAGGAATTTGTCTGGTTTTAGAAGTCCAGCAACTAGCTTTGAGTCTATTACTCAATTTAGCGATCATGGTAGTGACCAGCGAGTTAATGATTATCCAATTGACAGACAAATGGATGCCATTCATGCAAATTTATCTGATGTGCCGACTTTAGGTGATGATTTGAGGAATATCGATGAGAAAATTGCTCAAGAAGATCTGTCTGGTGTAGTCAGTCCTCCTATGATGTTTAGACATCCAACTCATTTGATTACTCCCTCTGAGATACTTATGGGAGCTTCTTCATCTGATGCGGCTAATATTGTCGAAAATAAGGCTGAAGGAAACTCAACTATTCAGGATGTGGTTGTCAATAATGATATGAGTGGGGCTGAGTTAGAGGTTAAAGAGGTGGGTGAGATTAGGTCCACTGAAAGTAGTGAATATGACTCTTGGGGTGAACCTCGGAACGCGTCGGCGGAAACTAAGGAGAAATTGTTCTGCTCCCAGGCTTCAGATCTTGGTATTGAGGTGGCCAGAGACTGTTGTGCAATATCATCTGAAACTTACATAACGGATGAAGCTCAACAAGTTGTTTCTATGGACTCATTGATTGTACCTACTCATGGTAGTGAAGAAGACCAAGCCTCTACAAGAGGTGTGTGTGAAAAAGTTCCAGATTCATCTGCATCCACAATAATTCCACAGATGGCCTCACCAAGTTCTAAGGGGAAAAAACACAAGGGTAAAAATTCTCAAACGACTGGTCTGTCTTCTCCATCTCCAAGTGCTTTGAACTCACTCGATCTATCCAATGAACCTTGTTCAAGTTTTCCTTCTGTTGAAAGTGTGTATCCTCAAATGTTGGCAATCCAAGATACACTGAATCAGCTTATGGCAACACAAAAAGAGTTGCAGAAGCAGATACAGATGATAGTGGCTGTTCCAGTTACGAAGGAAGGTAAGAGACTGGAGACAGCTTTTGGGCGAAGCATGGAGAAGACTTTGAAGGCCAATAATGAGGCTTTATGGGCTCGATTTCAGGAAGAAAATGCGAAAAATGACAAGTCTCTGCGGGATTGTACGCAAAAGATAACAACTGTGGTAAATAATTTTATGAATAAGGACTTGCCCACATTGTTAGAAAAGGCAGTGAAGAAAGAAATGGCTGCTATTGGACCAGCTTTGGTTCGGACAATCACCCCAGTTATAGAGAAAACAATATCTTCATCCGTTATTGATTCTTTCCAGAGAGGTGTCGGTGATAAGGCAGTGAATCAACTGGAAAAATCTGTTAATACGAAACTCGAAGCTACTGTTGCAAGGCAAATTCAAGCACAGTTTCAAACATCTGGCAAGCAAGCTCTGCAGGAAGCTTTGAAATTAAATTTGGAAGCATCAGTGATTCCTGCTTTCGAGATGTCATGCAAATCAATGTTTGAGCAAATCGATACTACCTTTCAGAAAGGAATGGGTGAACATACTGCTGCCGTTCTGCAGCACGTTGAGTCTGCTCATTCTCCATTGGCAACGGCATTAAGGGATGCTATTAATTCTGTATCAACAGTAAGTCAGTCTTTGAGTGGAGAATTGGCCGATGGTCAACGAAAACTGATAGCTCTAGCAACCGCAGGTGCAAATATCAGTTCAATGAATCCATTGGTTTCTCAACTGAGCAATGGTCCTCTCGGTCTCCATGAGAAGGTTGAGGTTCCTTTGGATCCAACGAAAGAGATCTCTAGGCTTGTGTCTGAACGAAAGTATGAAGAAGCCTTCACTGCAGCTTTACAAAGAAGTGATGTGTCAATTGTATCTTGGTTATGTGCTCAGGTTGATCTTAGGGGAATTTTGACAATGGTGCCAGTCCCATTGAGTCAAGGAGTATTGCTCTCGCTTCTGCAACAATTGGCATGTGACATCAACAAGGATCGGGGTCAAAAAGTATCTTGGATGACTGATGTGGCAGCTGCCATAAACACAGGGGATCCAATGATTGCAGTGCACGTCCGTCCGATCTCTGATCAAGTGTATCAGATACTGAGCCATCAACGGAACATTGGTGGAATTCCTCCGGGGGAGATGTCGAGCATTCGCGTTCTGATGCATGTGATCAACTCCATCCTGGTGACGTGTAAATGA 3846 43.55 MAMIKAPGANLEPLPQPSAPLGPVPSAGVPEFSGPPGGPIMTTIPMLQGVSPGIASTGPVRMPSSKLPKGRHLFGDSVVYDVNVRLQGEVQPQLEVTPITKYGSDPQLVLGRQIAVNKTYICYGLKQGNIRVLNINTALRALFRGHEKRVTDMAFFAEDVHLLASVDIGGRVYVWKISEGPDEEGKQQITGKVVIAIHIEREEDVVHPRICWHCHKQEVLVVGYGKSVLRIDTTKVGKGEQFTAEVPLKVSLDKLIDGVQLVGKHDKEVTELSMCQWMTSRLVSASMDGTIKIWDDRKVPPLVVLKPHEGQPVNAAIFLTAPHRPDHIILITAGPLNREVKVWCSASEEGWLLPSDVDSWKCTQTLELKSSAEHQVEETFFNQVVALSQAGLLLVANAKKNAIYAVHIDYGSNPANTRMDYIAEFTVTMPILSFTGTSEILDRSTQIVQVYCVQTQAIQQYALDLSQCLPPPLENVITERTESNVSNDATNVDGLGLISPVSKPNEFLLTGSATKSATLLNDPEGVSTERYPISSIPLEVTSSVNKDPKPVLLTSASSNADIVCVPSPPLPMSPRLSRNLSGFRSPATSFESITQFSDHGSDQRVNDYPIDRQMDAIHANLSDVPTLGDDLRNIDEKIAQEDLSGVVSPPMMFRHPTHLITPSEILMGASSSDAANIVENKAEGNSTIQDVVVNNDMSGAELEVKEVGEIRSTESSEYDSWGEPRNASAETKEKLFCSQASDLGIEVARDCCAISSETYITDEAQQVVSMDSLIVPTHGSEEDQASTRGVCEKVPDSSASTIIPQMASPSSKGKKHKGKNSQTTGLSSPSPSALNSLDLSNEPCSSFPSVESVYPQMLAIQDTLNQLMATQKELQKQIQMIVAVPVTKEGKRLETAFGRSMEKTLKANNEALWARFQEENAKNDKSLRDCTQKITTVVNNFMNKDLPTLLEKAVKKEMAAIGPALVRTITPVIEKTISSSVIDSFQRGVGDKAVNQLEKSVNTKLEATVARQIQAQFQTSGKQALQEALKLNLEASVIPAFEMSCKSMFEQIDTTFQKGMGEHTAAVLQHVESAHSPLATALRDAINSVSTVSQSLSGELADGQRKLIALATAGANISSMNPLVSQLSNGPLGLHEKVEVPLDPTKEISRLVSERKYEEAFTAALQRSDVSIVSWLCAQVDLRGILTMVPVPLSQGVLLSLLQQLACDINKDRGQKVSWMTDVAAAINTGDPMIAVHVRPISDQVYQILSHQRNIGGIPPGEMSSIRVLMHVINSILVTCK 1281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7684150 7693675 - Bma030362 Bma10g00607 89670

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g00607 1281 MobiDBLite consensus disorder prediction 1 35 - -
Bma10g00607 1281 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 262 295 - -
Bma10g00607 1281 MobiDBLite consensus disorder prediction 13 32 - -
Bma10g00607 1281 SUPERFAMILY WD40 repeat-like 117 413 IPR036322 GO:0005515
Bma10g00607 1281 Gene3D - 111 462 IPR015943 GO:0005515
Bma10g00607 1281 PANTHER ENHANCER OF MRNA-DECAPPING-LIKE PROTEIN 51 1281 - -
Bma10g00607 1281 PANTHER ENHANCER OF MRNA-DECAPPING PROTEIN 4 51 1281 IPR045152 GO:0031087
Bma10g00607 1281 Pfam WD40 region of Ge1, enhancer of mRNA-decapping protein 95 409 IPR032401 -
Bma10g00607 1281 MobiDBLite consensus disorder prediction 777 840 - -
Bma10g00607 1281 MobiDBLite consensus disorder prediction 820 840 - -
Bma10g00607 1281 MobiDBLite consensus disorder prediction 791 808 - -
Bma10g00607 1281 Gene3D - 1193 1280 IPR044938 -
Bma10g00607 1281 SMART WD40_4 136 176 IPR001680 GO:0005515
Bma10g00607 1281 SMART WD40_4 258 295 IPR001680 GO:0005515
Bma10g00607 1281 ProSiteProfiles Trp-Asp (WD) repeats profile. 262 295 IPR001680 GO:0005515
Bma10g00607 1281 Coils Coil 857 877 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g00607 K12616 EDC4; enhancer of mRNA-decapping protein 4 - csv:101211283 1831.99
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma10g00607 Bma-Chr10:7684150 Bma10g00647 Bma-Chr10:9253422 0 wgd
Bma10g00607 Bma-Chr10:7684150 Bma13g01135 Bma-Chr13:44550729 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g749 . . . . Bpe09g00103 . Bma10g00607 . . . . . . . . . . . . . . . . . Cla10g00390 Cam10g0390 Cec10g0412 Cco10g0402 Clacu10g0397 Cmu10g1230 Cre10g0645 . . . Cone15ag1288 . Csa03g00397 . Cme06g02727 . Blo10g00884 Bda05g00666 . . . . . Sed08g2886 . . . . . . Cpe14g00796 . Bhi11g00432 Tan01g1873 Cmetu06g2534 . . Mch10g1408 . . . . . . . . . . Chy06g01916 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004211 1 3 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma10g00607 Bma_Chr10 FPKM 18.842976 18.849077 24.169365 20.356895 11.289357 13.36537 9.158883 35.661789 41.763306 35.414837