Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g00617 ATGTCGGAAGGGCAGTACGGCGATCACAGTCATCTGCTTGTATCAACGGAGGCTCATGTCGAGGACAATGACTTGGAAGCTCGGATTAGAGATGGCGGCGCAGATGGAGTTCAGAGCCACAATAACCGGAGCGGCGGCGAAAGATTAACAGGAGGCTTTATGGATCTGTTTAAGCATTTGAATAAAGCGACCTTTTCTAATCGCCGTCACAGTTTCAAGCGTCTCGATTGGGACGACAATCCTGTTAATGAATCCGCATTAACCGCAGGTAGAGGTAGGAATAATCATCATCATCGCTCTTATAATGATGATTTTCATCTTCATATTCATCATGCCCCGACTGTTACCACCACCGGTGATGCCGACGCTGATGACGTTCTAGATGACTCCGCCCCTCCAGAATGGGCATTGCTCCTTATTGGCTGCCTCGTTGGCCTCGCTACTGGTCTCTGCGTTGCTGCATTTAACAAAGGGGTGCACGTGATTCATGGATGGGCATGGGCTGGCACTCCAAATGAGGGTGCCGCTTGGCTTCGTTTACAGAGGTTGGCTGATACTTGGCATCGCATTCTCTTAATACCAGTCACTGGAGGTGTAATTGTTGGGATGATGCATGGCTTGGTTGAAATACTCTATGAAATAAAGCAATCAAGTCCTTCTCAAAGGCAAGGATTTGATTTGCTTCGTGGAGTCTTTCCCACAGTAAAGGCCATTCAGGCAGCCATCACTTTAGGTACTGGTTGTTCATTAGGTCCTGAAGGACCTAGTGTGGACATTGGAAAATCTTGTGCAAATGGATTCTATGTGATGATGGAAAACAACAGCGAAAAGATAAAAATAGCCTTTGTTGCTGCTGGTGCAGCTGCAGGAATAGCTTCAGGTTTTAATGCAGCTGTTGCCGGTTGCTTCTTTGCTATTGAAACTGTTTTAAGGCCTCAACGAGCTGAAAATTCACCACCATTTACAACTGCTATGATTATTCTTGCTTCTGTAATCTCTTCCACTGTGTCAAATGTTTTACTTGGGACACAGTCAGCTTTTACAGTTCCTACATATGATTTGAAGTCTGCCGCAGAATTACCTTTGTACCTGATATTGGGCATGCTATGTGGAGTTGTGAGTGTAGCTGTGACTTGGTTAGTCAGTTGGTTTCATAAATCATTTGAGCTTATCAAGGACAGATTTAGCCTCCCAGCTGTTGTCTGTCCTGCTTTAGGCGGTTTAGGAGCTGGAATAATTGCCCTCAAGTATCCAGGAATTCTTTATTGGGGCTTCACAAATGTTGAAGAAATTCTACATACTGGAAAGAGTGCCTCTGCTCCTGGAATATGGCTATTAACTCAATTAGCAGCAGCAAAGGTTGTTGCAACTGCTCTATGCAAGGGTTCCGGGCTTGTGGGTGGCCTTTACGCCCCAAGTCTAATGATTGGTGCAGCCGTTGGTGCTGTATTTGGAGGTTCAGCAGCAGAAGTTATCAACTCTGCCATTCCTGGAAATGCAGCTGTTGCACAGCCTCAAGCATATGCACTGGTTGGAATGGCTGCTACACTCGCTTCTGTTTGTTCAGTGCCCTTGACGTCAGTTCTACTTCTCTTTGAGCTGACAAAAGATTACAGGATTCTGCTTCCTCTCATGGGAGCTGTTGGATTAGCCATATGGGTTCCTTCAGTGACAAAGCAAGCAAAGGAGATTGAAGTTTCTGATAGTCGTAGCTCTGTCAGAAACTACTCTCCTATTTCTCCTTCTGCACGTAAACTTGATATTACAAGGAGACAAAATGATGCAAGCAATGATTTGGAACTCTCAACTATTGGAAATGTATCAGACAGTGAAACAATTGATGAAGATATTCTTATGGAAGATTTTAAGGTTTCTCAGGCCATGTCGAAGAACTTCCTTAAGATTACATTGTCGACGAGCTTGAAAGATGCATTGAAATATATAAATGAAAGTCAACAGAACTGTGCTCTTGTGGTGGATGATGGAGATTTTCTTGAGGGAATCTTAACAAGTGGTGACCTTAGACGGTGTCTTTCTAAACTATCTAGCGAAGCTTCTTCGAAGGGGGATGCAAGTGTTGTGTCCTCTATTTGTACTAGAGGGATAAGTTATCGTGGCCGAGAACGTGGGCTTCTAACTTGTTACCCAGACACTGATTTGGCAACGGCCAAAGATCTAATGGAGGCTAAGGGTATAAATCAGTTACCCGTCGTAAAGCGCAGTGGAGCATCCAAGAAGCATTGGAAACAAAGAATTGTTGCTGTTCTCCACTACGAATCAATACAGAATTGTCTCAGAGATTTCATCAATCACAGGAAATCAGTCTATCAACGTGGCAAAGCGATCAATATTGGGAAAATAACAGACGGTCATTAA 2376 44.15 MSEGQYGDHSHLLVSTEAHVEDNDLEARIRDGGADGVQSHNNRSGGERLTGGFMDLFKHLNKATFSNRRHSFKRLDWDDNPVNESALTAGRGRNNHHHRSYNDDFHLHIHHAPTVTTTGDADADDVLDDSAPPEWALLLIGCLVGLATGLCVAAFNKGVHVIHGWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMMHGLVEILYEIKQSSPSQRQGFDLLRGVFPTVKAIQAAITLGTGCSLGPEGPSVDIGKSCANGFYVMMENNSEKIKIAFVAAGAAAGIASGFNAAVAGCFFAIETVLRPQRAENSPPFTTAMIILASVISSTVSNVLLGTQSAFTVPTYDLKSAAELPLYLILGMLCGVVSVAVTWLVSWFHKSFELIKDRFSLPAVVCPALGGLGAGIIALKYPGILYWGFTNVEEILHTGKSASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEVINSAIPGNAAVAQPQAYALVGMAATLASVCSVPLTSVLLLFELTKDYRILLPLMGAVGLAIWVPSVTKQAKEIEVSDSRSSVRNYSPISPSARKLDITRRQNDASNDLELSTIGNVSDSETIDEDILMEDFKVSQAMSKNFLKITLSTSLKDALKYINESQQNCALVVDDGDFLEGILTSGDLRRCLSKLSSEASSKGDASVVSSICTRGISYRGRERGLLTCYPDTDLATAKDLMEAKGINQLPVVKRSGASKKHWKQRIVAVLHYESIQNCLRDFINHRKSVYQRGKAINIGKITDGH 791
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 8468312 8473095 + Bma004335.1 Bma10g00617 89680

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g00617 791 Gene3D Clc chloride channel 125 571 - -
Bma10g00617 791 ProSiteProfiles CBS domain profile. 628 684 IPR000644 -
Bma10g00617 791 PANTHER CHLORIDE CHANNEL PROTEIN CLC-E 1 781 - -
Bma10g00617 791 CDD CBS_pair_voltage-gated_CLC_euk_bac 628 761 - -
Bma10g00617 791 SUPERFAMILY CBS-domain pair 618 742 IPR046342 -
Bma10g00617 791 Gene3D - 609 767 IPR046342 -
Bma10g00617 791 ProSiteProfiles CBS domain profile. 707 774 IPR000644 -
Bma10g00617 791 SUPERFAMILY Clc chloride channel 133 558 IPR014743 -
Bma10g00617 791 CDD Voltage_gated_ClC 145 551 - -
Bma10g00617 791 PANTHER CHLORIDE CHANNEL PROTEIN CLC-F 1 781 - -
Bma10g00617 791 Pfam Voltage gated chloride channel 228 554 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bma10g00617 791 Pfam CBS domain 710 742 IPR000644 -
Bma10g00617 791 Pfam CBS domain 624 679 IPR000644 -
Bma10g00617 791 PRINTS Chloride channel signature 288 307 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bma10g00617 791 PRINTS Chloride channel signature 236 255 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bma10g00617 791 PRINTS Chloride channel signature 524 543 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bma10g00617 791 PRINTS Chloride channel signature 465 485 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bma10g00617 791 PRINTS Chloride channel signature 506 522 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bma10g00617 791 SMART cbs_1 631 679 IPR000644 -
Bma10g00617 791 SMART cbs_1 710 766 IPR000644 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g00617 - - - csv:101212254 1048.5
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma10g00617 Bma13g01145 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma10g00617 Bma-Chr10:8468312 Bma10g00639 Bma-Chr10:8790012 0 dispersed
Bma10g00616 Bma-Chr10:8454063 Bma10g00617 Bma-Chr10:8468312 4.18E-24 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g793 . . . . Bpe09g00096 . Bma10g00617 Bma13g01145 . . . . . . . . . . . . . . . . Cla10g00375 . . . . . . . . Cone14ag1276 Cone15ag1302 . . . . Blo07g00854 Blo10g00891 . Bda12g00991 . Bpe03g00734 . . Sed08g2869 . . . Cma16g00996 . Car16g00953 . . Bhi11g00403 Tan01g1903 Cmetu06g1959 . Hepe06g1241 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004422 1 1 2 4 2 1 2 1 1 1 3 1 2 1 1 2 1 2 2 1 1 0 1 1 2 1 0 3 1 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma10g00617 Bma_Chr10 FPKM 0.216556 0.670485 0.0 0.0 2.633638 2.605843 2.552761 0.271837 0.0 0.229601