Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g00631 ATGCTTGGCAGCTTAGTTTTTCAATCCCCTGTCAACTCAAATCCTGCTCCGTCCTCTTCCATGAAGACGAAACGCGCCGATCGGGACCCCCTCGATTCCTCCGTCGCCGATCACTCCGTCAAGAGGCAGAACGCCGGAGTTAATTTTCAAGGCGGGACTAGTGTTTCCGGCGATCAAAGCGTCGAGGATCGCGAAGAAGAAGAAGAGCACCTGCCGCGAGAAGAGGCGGAGCCGCTTCTTGACGGAGAGACGACCGGGTTGAGACTTTTGGGGCTCTTGCTACAATGCGCTGAGTGCATAGCCGTGGATAATCTTCAGGAAGCTAGCGACCTCTTGCCGGATATCTCCGAGCTCTCCTCGCCATTTGGTTCCTCTCCCGAAAGGGTTGGCGCGTACTTTGTGCACGCCCTTCAGGCGCGTGTGATAAGCTCTTGGTTAGGTTCTTATTCGCCATTGACGATTAAATCTCTTACTCAAACTCAGTCTCAGAAAATCTTCAATGCTTTTCAATTCTACAACTCCGTCAGTCCTTCGATCAAATTCTCGCACTTCACGGCCAATCAAGCGATTTTCCAAGCTTTGGACGGCGAGGATCACATCCATATTATTGACCTCGACATAATGCAAGGCCTTCAATGGCCGGGATTGTTCCACATCCTCGCCTCCCGATCGAAGAGGATTCGGTCGGTGAGAATTACTGGCTTCGGATCGTCGGCTGAGCTACTTCAGGCAACCGGAAGGAGACTTGCGGATTTTGCGAGCTCTCTACGGCTGCCATTCGAATTTCATCCATATGAGGGGAAAATCGGTAATCTAACCGATCTGAGCCAACTGGAGGTTCGGCCGAACGAGGCTACGGTGGTGCACTGGATGCAGCATTGCTTGTACGACATAACGGGGAGCGATCTTGGGACGTTGAGATTATTGACTTTGCTGAGACCGAAATTGATCACCATCGTTGAACAGGATCTCACCCACGGCGACAGCTTCTTAGGAAGGTTCGTCGAGGCGTTGCATTATTACAGCGCGTTATTCGACGCGCTCGGGGATAGTTTGAGTGCAGACAGCGTAGAGAGGCATGTGGTGGAACAGCAGCTGTTCGGGTGTGAGATTAGGAACATTGTGGCCGTGAGTGGCCCCAAGAGAACCGGAGAGGTCATGGTAGAGAGGTGGGGGAACGAGCTTAGACGGGTCGGATTTCGACCTGCTTCCCTCGCCGGAAACCCTGCTGCTCAGGCGAGTTTGCTGCTGGGGATGTTCCCTTGGAAAGGATACACTTTGGTCGAGGAAAATGGTTGCCTGAAGTTGGGTTGGAAGGATCTTTCACTGCTCACCGCCTCCGCTTGGCAGCCAGCCGATTGA 1362 53.01 MLGSLVFQSPVNSNPAPSSSMKTKRADRDPLDSSVADHSVKRQNAGVNFQGGTSVSGDQSVEDREEEEEHLPREEAEPLLDGETTGLRLLGLLLQCAECIAVDNLQEASDLLPDISELSSPFGSSPERVGAYFVHALQARVISSWLGSYSPLTIKSLTQTQSQKIFNAFQFYNSVSPSIKFSHFTANQAIFQALDGEDHIHIIDLDIMQGLQWPGLFHILASRSKRIRSVRITGFGSSAELLQATGRRLADFASSLRLPFEFHPYEGKIGNLTDLSQLEVRPNEATVVHWMQHCLYDITGSDLGTLRLLTLLRPKLITIVEQDLTHGDSFLGRFVEALHYYSALFDALGDSLSADSVERHVVEQQLFGCEIRNIVAVSGPKRTGEVMVERWGNELRRVGFRPASLAGNPAAQASLLLGMFPWKGYTLVEENGCLKLGWKDLSLLTASAWQPAD 453
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 8680757 8682118 + Bma004349.1 Bma10g00631 89694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g00631 453 Pfam GRAS domain family 91 450 IPR005202 -
Bma10g00631 453 PANTHER SCARECROW-LIKE PROTEIN 23 60 450 - -
Bma10g00631 453 MobiDBLite consensus disorder prediction 1 21 - -
Bma10g00631 453 ProSiteProfiles GRAS family profile. 80 450 IPR005202 -
Bma10g00631 453 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 60 450 IPR005202 -
Bma10g00631 453 MobiDBLite consensus disorder prediction 37 58 - -
Bma10g00631 453 MobiDBLite consensus disorder prediction 22 36 - -
Bma10g00631 453 MobiDBLite consensus disorder prediction 1 77 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma10g00631 Bma-Chr10:8680757 Bma14g01585 Bma-Chr14:32684803 2.11E-152 dispersed
Bma10g00631 Bma-Chr10:8680757 Bma01g00461 Bma-Chr1:3829901 2.63E-65 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57942 PF03514 GRAS 2.70E-113 CL0063 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g00631 - - zju:107404603 660.218