Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma10g00653 | ATGCAATTAGTGTCGCATGATAGTCATGGTGAAGATTCTTCTGAAAGTGAACCCGTCTTGAGACAGTCCGAGCAAATATCATTAGAATCTACATCTTCCTCTGAGATTACTTCAGTTGTAGAAGATGTTAATGGTGATGATTTACAAAATCAAGAGATTGATGAAACCTCTCATCTGGTGAATGTGGATCAATCACTATGTCGCATATGTCTCGACACTGGAGGGGAAGATTTAATTGCTCCCTGCCATTGCAAAGGCACTCAAAAGTTTGTTCATAGATCTTGCCTTGATAATTGGAGGTCTACAAAGGAGGGATTTGCTTTTTCTCATTGTACAGAATGCAGAGCAGTATTCATCTTGCGGGCAAATGTCCCTCCTGATAGATGGTGGTTGAGATTGAAATTTCAGTTCCTTGTTGCAAGGGATCATGCATTCATCTTTATCATTGTGCAGCTGATAGTGGCATTCTTGGGAGTATTGGTGTACAAATTCTACGGTGAGGAACTAAGAGAAATGTTTGGTTACGAAGAACACCCATATGGTTTCTACGCCATGGCTGTTTTGGCTATCATTTTGGTCGGTCTGCTCTATGGTTTCTTCCTAGCTATTATATGCGGACAGAGGATCAATGAACGCCATTATCACGTTCTTGCCAAACAAGAACTAACCAAGGAGTACGTGGTAGAAGATCGAGAATGCCATAAAAACACCCCCGAGCTCGACGCAAGCCACATCATGGAGCTAAAGATGTTGGGCCTGTATTAG | 765 | 41.96 | MQLVSHDSHGEDSSESEPVLRQSEQISLESTSSSEITSVVEDVNGDDLQNQEIDETSHLVNVDQSLCRICLDTGGEDLIAPCHCKGTQKFVHRSCLDNWRSTKEGFAFSHCTECRAVFILRANVPPDRWWLRLKFQFLVARDHAFIFIIVQLIVAFLGVLVYKFYGEELREMFGYEEHPYGFYAMAVLAIILVGLLYGFFLAIICGQRINERHYHVLAKQELTKEYVVEDRECHKNTPELDASHIMELKMLGLY | 254 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 9398895 | 9401311 | + | Bma004377.1 | Bma10g00653 | 89716 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma10g00653 | 254 | Pfam | RING-variant domain | 67 | 114 | IPR011016 | GO:0008270 | |
Bma10g00653 | 254 | CDD | RING_CH-C4HC3_MARCH | 67 | 115 | - | - | |
Bma10g00653 | 254 | MobiDBLite | consensus disorder prediction | 1 | 36 | - | - | |
Bma10g00653 | 254 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 59 | 121 | IPR011016 | GO:0008270 | |
Bma10g00653 | 254 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 61 | 119 | IPR013083 | - | |
Bma10g00653 | 254 | PANTHER | OS02G0132300 PROTEIN | 2 | 253 | - | - | |
Bma10g00653 | 254 | SUPERFAMILY | RING/U-box | 61 | 118 | - | - | |
Bma10g00653 | 254 | SMART | ringv_2 | 66 | 115 | IPR011016 | GO:0008270 | |
Bma10g00653 | 254 | MobiDBLite | consensus disorder prediction | 19 | 36 | - | - | |
Bma10g00653 | 254 | PANTHER | RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN | 2 | 253 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma10g00653 | Bma-Chr10:9398895 | Bma11g00486 | Bma-Chr11:6038818 | 8.18E-39 | dispersed | |
Bma10g00653 | Bma-Chr10:9398895 | Bma10g00693 | Bma-Chr10:10463121 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma10g00653 | - | - | rcu:8259964 | 420.624 |