Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g00653 ATGCAATTAGTGTCGCATGATAGTCATGGTGAAGATTCTTCTGAAAGTGAACCCGTCTTGAGACAGTCCGAGCAAATATCATTAGAATCTACATCTTCCTCTGAGATTACTTCAGTTGTAGAAGATGTTAATGGTGATGATTTACAAAATCAAGAGATTGATGAAACCTCTCATCTGGTGAATGTGGATCAATCACTATGTCGCATATGTCTCGACACTGGAGGGGAAGATTTAATTGCTCCCTGCCATTGCAAAGGCACTCAAAAGTTTGTTCATAGATCTTGCCTTGATAATTGGAGGTCTACAAAGGAGGGATTTGCTTTTTCTCATTGTACAGAATGCAGAGCAGTATTCATCTTGCGGGCAAATGTCCCTCCTGATAGATGGTGGTTGAGATTGAAATTTCAGTTCCTTGTTGCAAGGGATCATGCATTCATCTTTATCATTGTGCAGCTGATAGTGGCATTCTTGGGAGTATTGGTGTACAAATTCTACGGTGAGGAACTAAGAGAAATGTTTGGTTACGAAGAACACCCATATGGTTTCTACGCCATGGCTGTTTTGGCTATCATTTTGGTCGGTCTGCTCTATGGTTTCTTCCTAGCTATTATATGCGGACAGAGGATCAATGAACGCCATTATCACGTTCTTGCCAAACAAGAACTAACCAAGGAGTACGTGGTAGAAGATCGAGAATGCCATAAAAACACCCCCGAGCTCGACGCAAGCCACATCATGGAGCTAAAGATGTTGGGCCTGTATTAG 765 41.96 MQLVSHDSHGEDSSESEPVLRQSEQISLESTSSSEITSVVEDVNGDDLQNQEIDETSHLVNVDQSLCRICLDTGGEDLIAPCHCKGTQKFVHRSCLDNWRSTKEGFAFSHCTECRAVFILRANVPPDRWWLRLKFQFLVARDHAFIFIIVQLIVAFLGVLVYKFYGEELREMFGYEEHPYGFYAMAVLAIILVGLLYGFFLAIICGQRINERHYHVLAKQELTKEYVVEDRECHKNTPELDASHIMELKMLGLY 254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 9398895 9401311 + Bma004377.1 Bma10g00653 89716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g00653 254 Pfam RING-variant domain 67 114 IPR011016 GO:0008270
Bma10g00653 254 CDD RING_CH-C4HC3_MARCH 67 115 - -
Bma10g00653 254 MobiDBLite consensus disorder prediction 1 36 - -
Bma10g00653 254 ProSiteProfiles Zinc finger RING-CH-type profile. 59 121 IPR011016 GO:0008270
Bma10g00653 254 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 119 IPR013083 -
Bma10g00653 254 PANTHER OS02G0132300 PROTEIN 2 253 - -
Bma10g00653 254 SUPERFAMILY RING/U-box 61 118 - -
Bma10g00653 254 SMART ringv_2 66 115 IPR011016 GO:0008270
Bma10g00653 254 MobiDBLite consensus disorder prediction 19 36 - -
Bma10g00653 254 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 2 253 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma10g00653 Bma-Chr10:9398895 Bma11g00486 Bma-Chr11:6038818 8.18E-39 dispersed
Bma10g00653 Bma-Chr10:9398895 Bma10g00693 Bma-Chr10:10463121 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g00653 - - rcu:8259964 420.624