Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g00660 ATGGTGAAGTATTGGAGCTGGAGCTGGAGCTGGCGGTTTATGCTCATCAACATCTGCATTTTTGAATGGAGACCTACTCTCATACATTGTGCTACAGATCAAGGGGATGCTGCCGCTCTAAAGACCATGTACACCTCTTTAAATTCTCCACCTCAGTTAACCCAGTGGAGTGCAACTGGTGATGATCCATGCGGGCAGTCTTGGAAAGGTGTTTCTTGCTCAGGCTCACGGGTCACCGAAATCGAACTATCTGGCCTGGGACTTTCTGGATCAGTGGGATACCAGCTCACAAGTTTAACGGCACTGACCAACCTAGATCTGAGCAACAACAATCTTGGAGGGCAGATGCCTTATCAGCTACCACCAAAGTTACTGAGATTAAATCTTGGTCGTAATAACTTTAATGGAGCCATACAGTACTCTATATATCAAATGACTACTCTAAAGTACCTGAATATCAGCCATAACCAGCTTCAGTATCAACTAATTGATATGTTTGGCGGCTTTTCTTCTCTAGTCACGCTGGATATTTCATATAATTCTTTTTCGGGTGACCTCCCCAAGAGTTTTAGCTCCCTCTCCAGTATGAACACTATGTACTTGCAAAACAACCAGTTCACTGGCACCATTGACGTCCTCGCAAATCTTCCCCTTGAAAATTTGAATATTGAGAACAACCGATTTACTGGCTGGATTCCCGAGCAATTAGAAAACATCAATTTGCAGAAAAATGGTAACTCTTGGAGTTCCGGGCCTGCACCCCCTCCTCCACCTGGTACGCCTCCAGCCCCTAGCCGAAATCGCAACTCTAATGGAAATAACAGCCCCTCGGGTAGTGGTGGTAATAAATCAGGAATAGGAGGTGGGGCCATTGCTGGAATAATTATATCTGTTCTTATTGTTGGCTCGATTGTTGTCTTTTTCCTTGTAAAGAAAAGATCTAGGAAGACATCTTCAGACGTAGAAAAGCTCAACGACCAGCCTTTCACGCCTCTTGCTTCGAATGAAGTTCATGAAATGAAGTCGGTAGAAACTACCACCACGTTCAACACCAAGACATTTGATCCTTCAATTGGATTAAATCTTAAACCCCCACCTATTGATCGTCACAAATCATTTGATGAAGATGATTTCACAAAGAAAGCTGTCATCAAAAAGGTCAATAAGGCCCCCATAAATGTAAAATCATTTTCAATAGCTGATTTGCAGATGGCTACTGGGAGCTTCAATGTCGAAAATCTTCTTGGTGAAGGGTCATTTGGGCGTGTTTATCGGGCTCAGTTTGATGATGGCAAGGTCTTTGCTGTGAAGAAAATAGATTCATCTGCAATTTCCAGTGATTTTTTTGAAGATTTCACCGAAATTGTGTCAAAAATCTCCCATTTGCATCACCCTAATGTCACTGAGCTGATGGGTTATTGCTCAGAGCACGGGCAGCATCTGCTAGTTTATGAATTTCATAAAAATGGTTCCCTTCATGACTTCTTACATTTATCTGATGAATACTGTAAGCCGCTAACATGGAACTCACGTGTCAAAATCGCATTAGGAATTGCACGGGCATTGGAGTACCTGCATGAAGTTTGTTCACCATCAATTGTTCATAAAAATATGAAATCAGCGAATATATTACTCGATGCTGAACTCAATCCTCACCTTTCAGACTGTGGACTGGCCAGCTTCATGTCAGATCAGGCATTGGACAACAATACAGGATCTGGATACAGTGCCCCTGAGGTCACCATGTCTGGTCAATACAGTCTGAAGAGTGATGTCTACAGTTTTGGAGTCGTCATGTTGGAGCTTCTTAGCGGCCGAAAACCATTTGACAGTTCAAGATCAAGAGATGAACAATCCTTGGTTCGGTGGGCTACTCCACAGCTACATGACATTGATGCTTTATCCAAAATGGTTGATCCACAACTCGAAGGGCTCTACCCAGTTAAATCGCTCTCCCGATTTGCAGATGTGATTGCTCTTTGTGTACAGCCTGAGCCAGAGTTCAGACCACCAATGTCCGATGCGGTGCAAGCCCTGGTTGTACTCATGCAAAGGTCTAACATGAGTAAGAGAACGGTCAGAAACAATCATGGATCGCCCCCTCAAGCTGATGCGCAGGACAATTCGTAA 2130 43.62 MVKYWSWSWSWRFMLINICIFEWRPTLIHCATDQGDAAALKTMYTSLNSPPQLTQWSATGDDPCGQSWKGVSCSGSRVTEIELSGLGLSGSVGYQLTSLTALTNLDLSNNNLGGQMPYQLPPKLLRLNLGRNNFNGAIQYSIYQMTTLKYLNISHNQLQYQLIDMFGGFSSLVTLDISYNSFSGDLPKSFSSLSSMNTMYLQNNQFTGTIDVLANLPLENLNIENNRFTGWIPEQLENINLQKNGNSWSSGPAPPPPPGTPPAPSRNRNSNGNNSPSGSGGNKSGIGGGAIAGIIISVLIVGSIVVFFLVKKRSRKTSSDVEKLNDQPFTPLASNEVHEMKSVETTTTFNTKTFDPSIGLNLKPPPIDRHKSFDEDDFTKKAVIKKVNKAPINVKSFSIADLQMATGSFNVENLLGEGSFGRVYRAQFDDGKVFAVKKIDSSAISSDFFEDFTEIVSKISHLHHPNVTELMGYCSEHGQHLLVYEFHKNGSLHDFLHLSDEYCKPLTWNSRVKIALGIARALEYLHEVCSPSIVHKNMKSANILLDAELNPHLSDCGLASFMSDQALDNNTGSGYSAPEVTMSGQYSLKSDVYSFGVVMLELLSGRKPFDSSRSRDEQSLVRWATPQLHDIDALSKMVDPQLEGLYPVKSLSRFADVIALCVQPEPEFRPPMSDAVQALVVLMQRSNMSKRTVRNNHGSPPQADAQDNS 709
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 9492498 9498245 - Bma004385.1 Bma10g00660 89723

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g00660 709 MobiDBLite consensus disorder prediction 250 264 - -
Bma10g00660 709 Gene3D Ribonuclease Inhibitor 30 257 IPR032675 -
Bma10g00660 709 MobiDBLite consensus disorder prediction 242 282 - -
Bma10g00660 709 MobiDBLite consensus disorder prediction 265 282 - -
Bma10g00660 709 SUPERFAMILY Protein kinase-like (PK-like) 391 681 IPR011009 -
Bma10g00660 709 CDD STKc_IRAK 415 679 - -
Bma10g00660 709 SUPERFAMILY L domain-like 31 238 - -
Bma10g00660 709 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 6 23 706 - -
Bma10g00660 709 PRINTS Leucine-rich repeat signature 102 115 - -
Bma10g00660 709 PRINTS Leucine-rich repeat signature 145 158 - -
Bma10g00660 709 ProSiteProfiles Protein kinase domain profile. 409 682 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma10g00660 709 Pfam Leucine rich repeat 122 181 IPR001611 GO:0005515
Bma10g00660 709 Pfam Leucine rich repeat N-terminal domain 35 74 IPR013210 -
Bma10g00660 709 PANTHER OS01G0253100 PROTEIN 23 706 IPR045271 GO:0004714|GO:0006468
Bma10g00660 709 Gene3D Phosphorylase Kinase; domain 1 371 486 - -
Bma10g00660 709 Gene3D Transferase(Phosphotransferase) domain 1 488 703 - -
Bma10g00660 709 MobiDBLite consensus disorder prediction 690 709 - -
Bma10g00660 709 ProSitePatterns Protein kinases ATP-binding region signature. 415 438 IPR017441 GO:0005524
Bma10g00660 709 Pfam Protein kinase domain 410 677 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g00660 - - - vvi:100249831 967.222
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g01505 Bma-Chr4:51075316 Bma10g00660 Bma-Chr10:9492498 5.90E-11 dispersed
Bma09g01001 Bma-Chr9:49512925 Bma10g00660 Bma-Chr10:9492498 0 dispersed
Bma10g00660 Bma-Chr10:9492498 Bma13g01172 Bma-Chr13:45031311 6.41E-152 dispersed
Bma10g00660 Bma-Chr10:9492498 Bma13g01189 Bma-Chr13:45177803 0 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma12g00749 BCT 24 750 Strubbelig Receptor Gene Family AT4G03390 58.0 4.9e-191 664.8
Bma02g01363 BCT 24 629 Strubbelig Receptor Gene Family AT4G03390 53.9 3.6e-162 568.9
Bma09g01001 CCT 285 578 Strubbelig Receptor Gene Family AT4G03390 55.2 3.9e-87 319.7
Bma13g01172 . 154 444 Strubbelig Receptor Gene Family AT4G03390 54.7 8.6e-87 318.5
Bma13g01172 . 1 459 Strubbelig Receptor Gene Family AT1G78980 61.0 5.6e-154 541.6
Bma10g00660 . 26 688 Strubbelig Receptor Gene Family AT1G78980 51.4 2.4e-128 456.4
Bma09g01001 CCT 288 593 Strubbelig Receptor Gene Family AT1G78980 61.2 3.2e-101 366.3
Bma13g01172 . 1 442 Strubbelig Receptor Gene Family AT3G13065 51.8 1.1e-117 421.0
Bma09g01001 CCT 285 576 Strubbelig Receptor Gene Family AT3G13065 60.1 3.6e-97 352.8
Bma13g01189 CCT 387 682 Strubbelig Receptor Gene Family AT1G11130 51.5 1.8e-83 307.4
Bma09g01001 CCT 288 576 Strubbelig Receptor Gene Family AT1G11130 53.8 5.1e-83 305.8
Bma10g00660 . 397 679 Strubbelig Receptor Gene Family AT1G11130 51.9 2.4e-80 297.0
Bma12g00749 BCT 24 750 Strubbelig Receptor Gene Family AT4G03390 58.0 4.9e-191 664.8
Bma02g01363 BCT 24 629 Strubbelig Receptor Gene Family AT4G03390 53.9 3.6e-162 568.9
Bma09g01001 CCT 285 578 Strubbelig Receptor Gene Family AT4G03390 55.2 3.9e-87 319.7
Bma13g01172 . 154 444 Strubbelig Receptor Gene Family AT4G03390 54.7 8.6e-87 318.5
Bma13g01172 . 1 442 Strubbelig Receptor Gene Family AT3G13065 51.8 1.1e-117 421.0
Bma09g01001 CCT 285 576 Strubbelig Receptor Gene Family AT3G13065 60.1 3.6e-97 352.8
Bma13g01172 . 1 459 Strubbelig Receptor Gene Family AT1G78980 61.0 5.6e-154 541.6
Bma10g00660 . 26 688 Strubbelig Receptor Gene Family AT1G78980 51.4 2.4e-128 456.4
Bma09g01001 CCT 288 593 Strubbelig Receptor Gene Family AT1G78980 61.2 3.2e-101 366.3
Bma13g01189 CCT 1 696 Strubbelig Receptor Gene Family AT1G53730 60.5 3.7e-201 698.4
Bma10g00660 . 15 693 Strubbelig Receptor Gene Family AT1G53730 63.4 5.2e-195 677.9
Bma09g01001 CCT 1 587 Strubbelig Receptor Gene Family AT1G53730 59.0 8.1e-164 574.3
Bma13g01172 . 3 450 Strubbelig Receptor Gene Family AT1G53730 50.5 1.1e-117 421.0
Bma13g01189 CCT 13 702 Strubbelig Receptor Gene Family AT3G14350 60.4 2.5e-191 665.6
Bma10g00660 . 15 699 Strubbelig Receptor Gene Family AT3G14350 53.1 3.5e-164 575.5
Bma09g01001 CCT 1 590 Strubbelig Receptor Gene Family AT3G14350 63.2 1.0e-163 573.9
Bma13g01172 . 101 461 Strubbelig Receptor Gene Family AT3G14350 52.0 5.5e-93 339.0
Bma13g01189 CCT 394 701 Strubbelig Receptor Gene Family AT4G22130 64.4 1.3e-113 407.1
Bma10g00660 . 376 698 Strubbelig Receptor Gene Family AT4G22130 62.1 5.1e-113 405.2
Bma13g01172 . 155 457 Strubbelig Receptor Gene Family AT4G22130 58.7 1.2e-103 374.0
Bma12g00749 BCT 437 742 Strubbelig Receptor Gene Family AT4G22130 58.3 1.4e-99 360.5
Bma02g01363 BCT 369 625 Strubbelig Receptor Gene Family AT4G22130 59.3 2.2e-84 310.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001486 0 7 2 3 1 2 4 1 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 1 1 2 2 1 1 1 66
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66738 PF00069 Pkinase 9.30E-43 CL0016 Bma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma10g00660 Bma_Chr10 FPKM 0.816571 0.861645 1.01815 1.387056 1.628139 1.826354 2.366003 1.617311 1.199761 1.095742