Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g00665 ATGACCGACGTCGAGCATTTGACCGCCGGAGTCCAAGATTCCGGCCACCAACCGCCCATCCTCAAGAGAAACAAGAAGAAACTCTTGTTCTGGGCTCTCTCTGCTATTCTATTTCTTTCCGTTGTCATCGGAATTGCAGTAGGAGTAGAGTCGAGAAAGAAGCCCGACGAGATTGAGACTTCTCCTTCCCATTCTATAATCAAAACCTCTTGCAGCTCCACTCTGTACCCCGAGTTGTGCTTCTCCACACTGACATCTGTAGACAGAGCCAGCAAAAAGGTCTCCGGCCCGAAAGACGTCATCGAACTGGCGTTAAATATCACGACGGAAGCAGTGAAACAGAATTATTTAGCCATTAAAAAGCTTACGACTCGAAAAGGCCTGACCAAGCGCGAGAAGTGTGCTCTCAATGATTGCCTGGACAACATGGACGACACCATTTACGAGCTTCAGAAGGCTGTAGAGGATCTCCATTTGTACCCAACCAAGAAATCTCTGTTCCAGCACGCCGACGACCTTAAAACTTTGCTCAGCTCAACAATCACCAACCAGGAGTCTTGCCTGGACGGGTTCTCTCACGACGATGCTGACAGAAAGGTGAGGAAGGAGCTGCTAAAGTCAGAGATTCACATCGAGAAAATGTGCAGCAATGTCTTGGCGATGATTAAGAACATGACAGACACTGACATAATCAACGAGAGTAAAATGATGGGGAGGAAAAATCTGATGGAGAACGTCGGTCACGACGACATAAAGTGGCTGGAATGGCTTTCGGCTGCCGACCGGCGGCTTTTGCAGTCGTCCTCAGTAACACCCAACGTAGTGGTGGCAGCCGACGGCAGCGGGAATTACCGGACAGTCTCGGCTGCAGTGGCAGCCGCTCCGTCTCAGCGCACTACCAAATATATCATCAGAATCAAAGCCGGAGTTTACAGAGAAAACGTAGAGGTGCCGAGAAGTAAAACCAACATCATGTTTTTTGGCGATGGAAGAACAAGCACCATCATCACCGGAAGCAGGAATGTAGTCGACGGCAGCACAACTTTCAACTCCGCAACCGTTGCGGTGGTTGGGGAAAGATTTCTAGCAAGAGATATTACCTTCCAAAACACGGCCGGCCCATCAAAGCACCAGGCGGTGGCGCTTCGCGTCGGGTCCGATCTCTCTGCGTTTTACCGATGTGACATGCTTGCCTACCAAGACACCCTCTACGTCCACTCCAACCGTCAATTCTTCATAGAATGTTTCATCGCCGGCACCGTAGATTTCATCTTCGGCAACGGCGCCGCCGTCTTGCAAAACTGCGACATCCATGCGCGTCGACCGAACTCCGGCCAAAAGAACATGGTCACGGCCCAAGGCCGGACTGACCCGAACCAAAACACTGGCATTGTAATCCAGAAATGTAGAATCGGCGCCACCTCCGACCTCAGGCCTGTTCAGAGCAGTTTCCCAACTTACCTGGGAAGACCATGGAAGGAATACTCAAGGACGGTGGTTATGCAAACGTCGATAAGTAACGTCATAAACCCAGCCGGATGGCACATCTGGGACGGGACTTTCGCACTCAACACCCTGTTTTACGGCGAGTACATGAACACGGGGGCCGGGGCTGCCACGTCGAAGAGGGTAAGTTGGAAAGGATTCAAGGTGATCACCAGTGCAAGTGAAGCTCAGGCCTTCACTCCGGGAAGGTTCGTCGCCGGCGGTAGTTGGTTGAGTGGCACTGGTTTTCCATTCTCGCTGGGTCTGTAG 1755 51.57 MTDVEHLTAGVQDSGHQPPILKRNKKKLLFWALSAILFLSVVIGIAVGVESRKKPDEIETSPSHSIIKTSCSSTLYPELCFSTLTSVDRASKKVSGPKDVIELALNITTEAVKQNYLAIKKLTTRKGLTKREKCALNDCLDNMDDTIYELQKAVEDLHLYPTKKSLFQHADDLKTLLSSTITNQESCLDGFSHDDADRKVRKELLKSEIHIEKMCSNVLAMIKNMTDTDIINESKMMGRKNLMENVGHDDIKWLEWLSAADRRLLQSSSVTPNVVVAADGSGNYRTVSAAVAAAPSQRTTKYIIRIKAGVYRENVEVPRSKTNIMFFGDGRTSTIITGSRNVVDGSTTFNSATVAVVGERFLARDITFQNTAGPSKHQAVALRVGSDLSAFYRCDMLAYQDTLYVHSNRQFFIECFIAGTVDFIFGNGAAVLQNCDIHARRPNSGQKNMVTAQGRTDPNQNTGIVIQKCRIGATSDLRPVQSSFPTYLGRPWKEYSRTVVMQTSISNVINPAGWHIWDGTFALNTLFYGEYMNTGAGAATSKRVSWKGFKVITSASEAQAFTPGRFVAGGSWLSGTGFPFSLGL 584
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 9604969 9607921 + Bma004393.1 Bma10g00665 89728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g00665 584 Gene3D - 267 584 IPR012334 -
Bma10g00665 584 Gene3D Invertase/pectin methylesterase inhibitor family protein 63 226 IPR035513 -
Bma10g00665 584 PANTHER PECTINESTERASE 32 583 - -
Bma10g00665 584 SMART PMEI_2 62 221 IPR006501 GO:0004857
Bma10g00665 584 Pfam Plant invertase/pectin methylesterase inhibitor 66 221 IPR006501 GO:0004857
Bma10g00665 584 TIGRFAM PME_inhib: pectinesterase inhibitor domain 34 225 IPR006501 GO:0004857
Bma10g00665 584 Pfam Pectinesterase 273 569 IPR000070 GO:0030599|GO:0042545
Bma10g00665 584 CDD PMEI-like_3 69 226 - -
Bma10g00665 584 PANTHER PECTINESTERASE 32 583 - -
Bma10g00665 584 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 65 226 IPR035513 -
Bma10g00665 584 SUPERFAMILY Pectin lyase-like 270 583 IPR011050 -
Bma10g00665 584 ProSitePatterns Pectinesterase signature 2. 417 426 IPR033131 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma10g00665 Bma-Chr10:9604969 Bma15g00533 Bma-Chr15:6156349 3.41E-151 dispersed
Bma10g01147 Bma-Chr10:39051726 Bma10g00665 Bma-Chr10:9604969 1.21E-117 dispersed
Bma14g01451 Bma-Chr14:27925480 Bma10g00665 Bma-Chr10:9604969 1.24E-56 dispersed
Bma10g00665 Bma-Chr10:9604969 Bma10g00666 Bma-Chr10:9652008 3.53E-142 tandem
Bma05g00270 Bma-Chr5:7600164 Bma10g00665 Bma-Chr10:9604969 5.37E-78 transposed
Bma15g00046 Bma-Chr15:641122 Bma10g00665 Bma-Chr10:9604969 4.50E-122 transposed
Bma10g00665 Bma-Chr10:9604969 Bma10g00705 Bma-Chr10:10678874 5.88E-171 wgd
Bma10g00665 Bma-Chr10:9604969 Bma13g01193 Bma-Chr13:45200804 3.62E-117 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g00665 K01051 - rcu:8276562 847.425