Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g00669 ATAATGTTTCATCCCCAAGGAGCTGCTAGACACACTTGTAGTCTCCTGGCAGTAACTTGTGGAAATAGTCTCCAAGAAAAGTATAATAGGGATGTTTTCGAGGATCAGCTTCGGTTTCCTTTCCCGGAGTTAGTTTCTTCCTGCCGTTTAGAGGTCAAGATACTTACTAATCCAAGCAAAAATGAAATTTGTAAAGTTATTGATTCGTACCAACCGAATCTCTTATATTTGCAAGGAGAACAACTTGAAAATGATGAAGTGGGCTCTTTGGTCTTGGCAGATGTGGATTTGTCCTCTGTAGAAGCTATTCATGATCTTTTTCGAACCACACTTCCCACCACTGTTTACTTGGAAATCCCAAATGGAGACCAATTGGCTGAAGCACTTCACTTCAAGGGCATTCCTTACGTGATATATTGGAAGAACACATTTTCACGATATACTTCCTGCCACTTTCGCAATGCATTTCTTTCTGTGGTTCAAAGTTCATCGACCCATATATGGGATGCTTTTCAACTTGGGCTGGCATCCTTTCGGATCTACTGTTTGCGAAGCTCCCATGGTCGTAGTGATAGACTTAGTGAAGAGCTTGAGCCACATCTTCTTGGGGAGCCGTCTAAGATAAATGTAGAGCCTCCTGAGGTGGAGGTAGGAGAAGATGAAGATGGTTCTCCGCCACCACTTCCCACCATAAACATTCACAATGATGATGTAACCACTAGATTTCTCATTTGTGGCGAATCATCTACGGTGGATGAAAGCTTATTGGGATCTTTGGAGGATGGCCTTAATGCCCTCTTAAACATTGAAGTAAGTGACACCAGACTGAGTTTATACACACCTTGTCCGGAAAATAAAAATTTGAACAAATCAAGAATTCTTATCAGAATTGCTTCTTGGTTTTGTAAAGTCATTACTAATTCTGTCTTCTCTGTATCATACAGTGCACCTCCACCATCTCTTCAGGCAGGGACATTTTCTCGTGGTGTTGTGACAATGAGATGTGACTTATCAACTAGTAGTGCTGCCCACATCTCACTTTTGGTGTCTGGTAGTGCACGGACATGTTTTGATGATCAGCTTTTGGAAAATCATATCAAAAATGAAATAATCGAAAATGCTCTTTTAGTTCGCTCTATACTGGACAGTGATGGAAACAAAGTTCCTTTATCTGAACCTCGGAAATCTGAGTCAATCGCTTGTGGTGCAACAGTGTTTGAGGTTTCCATGAAGGTCCCTTCGTGGGCGTTACAGGTGTTGAGGCAGTTGGCACCAGACGTTACTTATCGTAGTTTAGTAGCACTTGGCATTGCAAGTGTTCAGGGATTGCCCGTAGCTTCGTTTGAGAAAGAGGATGCGGAGCGGCTGCTTTTTTTCTGTTCTAGTCATGAAAAGGAAATAGTTTTAGATAATTTGAGGTTTTCCAACCCCCCAAGCTGGTTGAAGCCACCAGTTCCTAGCAGAAAGAGATGCCAACTAAGCAATGGGAAAATCATTGGTTTATTCGATAGTCCTGCTTATGAAAATATCCTTCCGGCCTGCAAAATAAAAGAAGAAAACCAGGATGGTAGCGCAACAAATGGCTTTAAGACGTCTACTCTACCTGCTCCGCAGAGATTCAGAGTAGCTGCTTTAAGGCCCATTCCTCGCAGCCATCGTCATAAAATTACACCCTTCTCTGGAATAACCGAGGCAAATGGGCAAAATGGAGGCCAGATTAAAGCTAATATGCCTGTGGTTCCTTCCACTAAACAGTTTACTGCATTGGCAACACAGAGAAAGACATTTTCAAACTTGTCTCAGTCTAAGCAAATTATTTCCTTGAATCCTCTACCTTTAAAGAAACATGGTTGTGACAGGAGCTCAATACATACTTGCTGTGAGGAGAACTTTCTGAAGGACGTGATGGAGTTTCTAATCTTTAGAGGACATAATCGACTCATTCCTCAAGGTGGGTTTGCTGAGTTTCCTGAGGCCATACTAAATGGGAAGCGTCTAGACCTGTACAATCTGTACAAGGAGGTGGTTACAAGAGGCGGCTTTCATGTAGGTAATGGTATCAACTGGAAAGGTCAAATCTTTTCAAAGATGCGCAATTACACCATGACAAATAGAATGACGGGTGTTGGAAATACGTTGAAAAGACATTACGAGACGTATCTTTTAGAGTATGAGTTAGCTCATGACGATGTAGACGGGGAGTGTTGCTTGTTATGTCACAGTAGTGCGGCGGGGGATTGGGTGAACTGTGGCATATGTGGTGAGTGGGCCCATTTTGGCTGCGATAGACGGCAGGGCCTCGGTGCCTTTAAGGACTATGCGAAAACGGACGGCCTAGAATACATATGTCCGCATTGTAGTGTCGCAAACTTCAAAAAGAAATCACAGAAAATTGTGAACGGGTACTCTCAAGGCTGA 2418 42.8 IMFHPQGAARHTCSLLAVTCGNSLQEKYNRDVFEDQLRFPFPELVSSCRLEVKILTNPSKNEICKVIDSYQPNLLYLQGEQLENDEVGSLVLADVDLSSVEAIHDLFRTTLPTTVYLEIPNGDQLAEALHFKGIPYVIYWKNTFSRYTSCHFRNAFLSVVQSSSTHIWDAFQLGLASFRIYCLRSSHGRSDRLSEELEPHLLGEPSKINVEPPEVEVGEDEDGSPPPLPTINIHNDDVTTRFLICGESSTVDESLLGSLEDGLNALLNIEVSDTRLSLYTPCPENKNLNKSRILIRIASWFCKVITNSVFSVSYSAPPPSLQAGTFSRGVVTMRCDLSTSSAAHISLLVSGSARTCFDDQLLENHIKNEIIENALLVRSILDSDGNKVPLSEPRKSESIACGATVFEVSMKVPSWALQVLRQLAPDVTYRSLVALGIASVQGLPVASFEKEDAERLLFFCSSHEKEIVLDNLRFSNPPSWLKPPVPSRKRCQLSNGKIIGLFDSPAYENILPACKIKEENQDGSATNGFKTSTLPAPQRFRVAALRPIPRSHRHKITPFSGITEANGQNGGQIKANMPVVPSTKQFTALATQRKTFSNLSQSKQIISLNPLPLKKHGCDRSSIHTCCEENFLKDVMEFLIFRGHNRLIPQGGFAEFPEAILNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMRNYTMTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYICPHCSVANFKKKSQKIVNGYSQG 805
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 9674947 9679857 + Bma004398.2 Bma10g00669 89732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g00669 805 Pfam ARID/BRIGHT DNA binding domain 628 725 IPR001606 GO:0003677
Bma10g00669 805 ProSiteProfiles ARID domain profile. 625 729 IPR001606 GO:0003677
Bma10g00669 805 SMART ARID_2 622 725 - -
Bma10g00669 805 CDD ARID 628 725 - -
Bma10g00669 805 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 729 791 IPR013083 -
Bma10g00669 805 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 2 289 IPR042293 -
Bma10g00669 805 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 313 802 IPR042293 -
Bma10g00669 805 CDD PHD_ARID4_like 735 786 - -
Bma10g00669 805 SUPERFAMILY FYVE/PHD zinc finger 728 793 IPR011011 -
Bma10g00669 805 Gene3D - 620 728 IPR036431 GO:0003677
Bma10g00669 805 SUPERFAMILY ARID-like 628 740 IPR036431 GO:0003677
Bma10g00669 805 MobiDBLite consensus disorder prediction 211 231 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma10g00669 Bma-Chr10:9674947 Bma10g00710 Bma-Chr10:10830525 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57944 PF01388 ARID 1.10E-13 CL0123 Bma TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g00669 - - zju:107435388 1099.35