Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g00669 ATAATGTTTCATCCCCAAGGAGCTGCTAGACACACTTGTAGTCTCCTGGCAGTAACTTGTGGAAATAGTCTCCAAGAAAAGTATAATAGGGATGTTTTCGAGGATCAGCTTCGGTTTCCTTTCCCGGAGTTAGTTTCTTCCTGCCGTTTAGAGGTCAAGATACTTACTAATCCAAGCAAAAATGAAATTTGTAAAGTTATTGATTCGTACCAACCGAATCTCTTATATTTGCAAGGAGAACAACTTGAAAATGATGAAGTGGGCTCTTTGGTCTTGGCAGATGTGGATTTGTCCTCTGTAGAAGCTATTCATGATCTTTTTCGAACCACACTTCCCACCACTGTTTACTTGGAAATCCCAAATGGAGACCAATTGGCTGAAGCACTTCACTTCAAGGGCATTCCTTACGTGATATATTGGAAGAACACATTTTCACGATATACTTCCTGCCACTTTCGCAATGCATTTCTTTCTGTGGTTCAAAGTTCATCGACCCATATATGGGATGCTTTTCAACTTGGGCTGGCATCCTTTCGGATCTACTGTTTGCGAAGCTCCCATGGTCGTAGTGATAGACTTAGTGAAGAGCTTGAGCCACATCTTCTTGGGGAGCCGTCTAAGATAAATGTAGAGCCTCCTGAGGTGGAGGTAGGAGAAGATGAAGATGGTTCTCCGCCACCACTTCCCACCATAAACATTCACAATGATGATGTAACCACTAGATTTCTCATTTGTGGCGAATCATCTACGGTGGATGAAAGCTTATTGGGATCTTTGGAGGATGGCCTTAATGCCCTCTTAAACATTGAAGTAAGTGACACCAGACTGAGTTTATACACACCTTGTCCGGAAAATAAAAATTTGAACAAATCAAGAATTCTTATCAGAATTGCTTCTTGGTTTTGTAAAGTCATTACTAATTCTGTCTTCTCTGTATCATACAGTGCACCTCCACCATCTCTTCAGGCAGGGACATTTTCTCGTGGTGTTGTGACAATGAGATGTGACTTATCAACTAGTAGTGCTGCCCACATCTCACTTTTGGTGTCTGGTAGTGCACGGACATGTTTTGATGATCAGCTTTTGGAAAATCATATCAAAAATGAAATAATCGAAAATGCTCTTTTAGTTCGCTCTATACTGGACAGTGATGGAAACAAAGTTCCTTTATCTGAACCTCGGAAATCTGAGTCAATCGCTTGTGGTGCAACAGTGTTTGAGGTTTCCATGAAGGTCCCTTCGTGGGCGTTACAGGTGTTGAGGCAGTTGGCACCAGACGTTACTTATCGTAGTTTAGTAGCACTTGGCATTGCAAGTGTTCAGGGATTGCCCGTAGCTTCGTTTGAGAAAGAGGATGCGGAGCGGCTGCTTTTTTTCTGTTCTAGTCATGAAAAGGAAATAGTTTTAGATAATTTGAGGTTTTCCAACCCCCCAAGCTGGTTGAAGCCACCAGTTCCTAGCAGAAAGAGATGCCAACTAAGCAATGGGAAAATCATTGGTTTATTCGATAGTCCTGCTTATGAAAATATCCTTCCGGCCTGCAAAATAAAAGAAGAAAACCAGGATGGTAGCGCAACAAATGGCTTTAAGACGTCTACTCTACCTGCTCCGCAGAGATTCAGAGTAGCTGCTTTAAGGCCCATTCCTCGCAGCCATCGTCATAAAATTACACCCTTCTCTGGAATAACCGAGGCAAATGGGCAAAATGGAGGCCAGATTAAAGCTAATATGCCTGTGGTTCCTTCCACTAAACAGTTTACTGCATTGGCAACACAGAGAAAGACATTTTCAAACTTGTCTCAGTCTAAGCAAATTATTTCCTTGAATCCTCTACCTTTAAAGAAACATGGTTGTGACAGGAGCTCAATACATACTTGCTGTGAGGAGAACTTTCTGAAGGACGTGATGGAGTTTCTAATCTTTAGAGGACATAATCGACTCATTCCTCAAGGTGGGTTTGCTGAGTTTCCTGAGGCCATACTAAATGGGAAGCGTCTAGACCTGTACAATCTGTACAAGGAGGTGGTTACAAGAGGCGGCTTTCATGTAGGTAATGGTATCAACTGGAAAGGTCAAATCTTTTCAAAGATGCGCAATTACACCATGACAAATAGAATGACGGGTGTTGGAAATACGTTGAAAAGACATTACGAGACGTATCTTTTAGAGTATGAGTTAGCTCATGACGATGTAGACGGGGAGTGTTGCTTGTTATGTCACAGTAGTGCGGCGGGGGATTGGGTGAACTGTGGCATATGTGGTGAGTGGGCCCATTTTGGCTGCGATAGACGGCAGGGCCTCGGTGCCTTTAAGGACTATGCGAAAACGGACGGCCTAGAATACATATGTCCGCATTGTAGTGTCGCAAACTTCAAAAAGAAATCACAGAAAATTGTGAACGGGTACTCTCAAGGCTGA 2418 42.8 IMFHPQGAARHTCSLLAVTCGNSLQEKYNRDVFEDQLRFPFPELVSSCRLEVKILTNPSKNEICKVIDSYQPNLLYLQGEQLENDEVGSLVLADVDLSSVEAIHDLFRTTLPTTVYLEIPNGDQLAEALHFKGIPYVIYWKNTFSRYTSCHFRNAFLSVVQSSSTHIWDAFQLGLASFRIYCLRSSHGRSDRLSEELEPHLLGEPSKINVEPPEVEVGEDEDGSPPPLPTINIHNDDVTTRFLICGESSTVDESLLGSLEDGLNALLNIEVSDTRLSLYTPCPENKNLNKSRILIRIASWFCKVITNSVFSVSYSAPPPSLQAGTFSRGVVTMRCDLSTSSAAHISLLVSGSARTCFDDQLLENHIKNEIIENALLVRSILDSDGNKVPLSEPRKSESIACGATVFEVSMKVPSWALQVLRQLAPDVTYRSLVALGIASVQGLPVASFEKEDAERLLFFCSSHEKEIVLDNLRFSNPPSWLKPPVPSRKRCQLSNGKIIGLFDSPAYENILPACKIKEENQDGSATNGFKTSTLPAPQRFRVAALRPIPRSHRHKITPFSGITEANGQNGGQIKANMPVVPSTKQFTALATQRKTFSNLSQSKQIISLNPLPLKKHGCDRSSIHTCCEENFLKDVMEFLIFRGHNRLIPQGGFAEFPEAILNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMRNYTMTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYICPHCSVANFKKKSQKIVNGYSQG 805
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 9674947 9679857 + Bma004398.2 Bma10g00669 89732

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g00669 805 Pfam ARID/BRIGHT DNA binding domain 628 725 IPR001606 GO:0003677
Bma10g00669 805 ProSiteProfiles ARID domain profile. 625 729 IPR001606 GO:0003677
Bma10g00669 805 SMART ARID_2 622 725 - -
Bma10g00669 805 CDD ARID 628 725 - -
Bma10g00669 805 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 729 791 IPR013083 -
Bma10g00669 805 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 2 289 IPR042293 -
Bma10g00669 805 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 313 802 IPR042293 -
Bma10g00669 805 CDD PHD_ARID4_like 735 786 - -
Bma10g00669 805 SUPERFAMILY FYVE/PHD zinc finger 728 793 IPR011011 -
Bma10g00669 805 Gene3D - 620 728 IPR036431 GO:0003677
Bma10g00669 805 SUPERFAMILY ARID-like 628 740 IPR036431 GO:0003677
Bma10g00669 805 MobiDBLite consensus disorder prediction 211 231 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g00669 - - - zju:107435388 1099.35
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma10g00669 Bma-Chr10:9674947 Bma10g00710 Bma-Chr10:10830525 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi9g26 . Blo06g00765 . Bda10g00889 . Bpe10g00717 Bma10g00669 . . Cmo17g00636 . . . Car14g01069 . Cpe12g00555 . Bhi01g02835 . . . . . . . . . . . . . . . Cone7ag1258 . Lsi02g02861 Csa07g02313 . Cme01g02766 Blo07g00805 . Bda05g00623 . Bpe03g00693 . . . Sed04g2378 Cmo01g00019 . . Cma17g00656 . Car17g00618 . . Bhi09g00271 Tan06g0071 Cmetu01g1064 . Hepe03g1390 . . Cla09g00122 Cam09g0131 Cec09g0134 Cco09g0135 Clacu09g0138 . Cre09g0123 . Csa03g02792 Chy01g02133 Cme04g01382
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma05g01290 BCT 27 340 ARID Transcription Factor Family AT1G04880 60.8 1.6e-98 356.7
Bma04g01053 BCT 27 272 ARID Transcription Factor Family AT1G04880 55.5 2.1e-69 260.0
Bma01g00689 . 151 430 ARID Transcription Factor Family AT1G20910 66.4 1.2e-100 363.6
Bma15g00913 . 37 329 ARID Transcription Factor Family AT1G20910 53.8 3.0e-80 295.8
Bma01g02389 . 1 295 ARID Transcription Factor Family AT1G76110 59.4 8.9e-89 323.9
Bma01g00689 . 119 460 ARID Transcription Factor Family AT1G76510 67.0 2.4e-123 439.1
Bma15g00913 . 14 359 ARID Transcription Factor Family AT1G76510 55.7 4.5e-101 365.2
Bma13g01143 . 42 324 ARID Transcription Factor Family AT3G13350 52.2 1.7e-81 299.7
Bma10g00669 . 2 801 ARID Transcription Factor Family AT3G43240 55.3 6.2e-252 867.1
Bma10g00710 . 1 774 ARID Transcription Factor Family AT3G43240 56.6 6.2e-252 867.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001323 3 5 2 2 2 2 3 2 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 2 2 2 9 3 2 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57944 PF01388 ARID 1.10E-13 CL0123 Bma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma10g00669 Bma_Chr10 FPKM 6.105766 5.925012 1.266693 1.506759 1.311323 1.113888 1.465608 2.419031 2.455808 2.455969