Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g00693 ATGCAATTAGTGTCGCATGATAGTCATGGTGAAGATTCTTCTGAAAGTGAACCCGTCTTGAGACAGTCCGAGCAAATATCATTAGAATCTACATCTTCCTCTGAGATTACTTCAGTTGCAGAAGATGTTAATGGTGATGATTTACAAAATCAAGAGATTGATGAAACCTCTCATCTGGTGAATGTGGATCAATCACTATGTCGCATATGTCTCGACACTGGAGGGGAAGATTTAATTGCTCCCTGCCATTGCAAAGGCACTCAAAAGTTTGTTCATAGATCTTGCCTTGATAATTGGAGGTCTACAAAGGAGGGATTTGCTTTTTCTCATTGTACAGAATGCAGAGCAGTATTCATCTTGCGGGCAAATGTCCCTCCTGATAGATGGTGGTTGAGATTGAAATTTCAGTTCCTTGTTGCAAGGGATCATGCATTCATCTTTATCATTGTGCAGCTGATAGTGGCATTCTTGGGAGTATTGGTGTACAAATTCTACGGTGAGGAACTAAGAGAAATGTTTGGTTACGAAGAACACCCATATGGTTTCTACGCCATGGCTGTTTTGGCTATCATTTTGGTCGGTCTGCTCTATGGTTTCTTCCTAGCTATTATATGCGGACAGAGGATCAATGAACGCCATTATCACGTTCTTGCCAAACAAGAACTAACCAAGGAGTACGTGGTAGAAGATCGAGAATGCCATAAAAACACCCCCGAGCTCGACGCAAGCCACATCATGGAGCTAAAGATGTTGGGCCTGTATTAG 765 42.09 MQLVSHDSHGEDSSESEPVLRQSEQISLESTSSSEITSVAEDVNGDDLQNQEIDETSHLVNVDQSLCRICLDTGGEDLIAPCHCKGTQKFVHRSCLDNWRSTKEGFAFSHCTECRAVFILRANVPPDRWWLRLKFQFLVARDHAFIFIIVQLIVAFLGVLVYKFYGEELREMFGYEEHPYGFYAMAVLAIILVGLLYGFFLAIICGQRINERHYHVLAKQELTKEYVVEDRECHKNTPELDASHIMELKMLGLY 254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 10463121 10465578 + Bma004437.1 Bma10g00693 89756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g00693 254 Pfam RING-variant domain 67 114 IPR011016 GO:0008270
Bma10g00693 254 CDD RING_CH-C4HC3_MARCH 67 115 - -
Bma10g00693 254 MobiDBLite consensus disorder prediction 1 36 - -
Bma10g00693 254 ProSiteProfiles Zinc finger RING-CH-type profile. 59 121 IPR011016 GO:0008270
Bma10g00693 254 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 119 IPR013083 -
Bma10g00693 254 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 2 253 - -
Bma10g00693 254 PANTHER OS02G0132300 PROTEIN 2 253 - -
Bma10g00693 254 SUPERFAMILY RING/U-box 61 118 - -
Bma10g00693 254 SMART ringv_2 66 115 IPR011016 GO:0008270
Bma10g00693 254 MobiDBLite consensus disorder prediction 19 36 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma10g00693 Bma-Chr10:10463121 Bma14g01644 Bma-Chr14:34761088 2.49E-06 dispersed
Bma11g00486 Bma-Chr11:6038818 Bma10g00693 Bma-Chr10:10463121 1.84E-37 transposed
Bma10g00653 Bma-Chr10:9398895 Bma10g00693 Bma-Chr10:10463121 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g00693 - - rcu:8259964 423.32