Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g00703 ATGAAACCCGTTCAGCAACCTCCAGCCGCTACCCGCCGCCTTCGTCGGCCCGACCTGACCCTCCCACTCCCTAAACGCGACCCATTATTGGCTGTCCCTCTTCCGTTACCTCCACCCTCCAACTCAGCTCCCTCCTCCACTGCCTACCGCCACCAGTTCAGCTTCTCGGAGCTGCAGAGAATCAACCGAATCGGGAGCGGCAATGGAGGCACGGTCTACAAGGTCATTCATCGCCCAACCGGACAGCTCTATGCCCTTAAAGTCATCTACGGCAACCATGATGATTCCGTGAGGCGGCAGATCTGCCGGGAGATCGAGATTCTCCGAGGCGCGGACAATCCCTATATCGTCAAGTGCATTGATATGTTCGATCACAACGGCGAAATCCAAATCCTCCTCGAATACATGGATAAAGGTTCGTTAGAAGGGACCCATATACCTCAGGAACACCATCTATCTGATCTAGCCCGCCAGATTCTCAGTGGCCTTGCCTACCTCCATAGCCGCCGCATCGTCCACCGGGACATCAAGCCGTCTAATCTCCTAATCAACGCTCGTAAGCAGGTGAAAATCGCAGATTTCGGAGTGGGAAAGATCTTGGACCAGACGATGGATCCGTGTAACTCGGCTGTCGGAACGATTGCGTATATGAGCCCGGAGAGAATCAACTCCGATTTAAACCAGGGTCAGTACGACGGATACGCCGGTGATATTTGGAGTCTTGGAGTGAGCATTTTGGAGTTTTATTTGGGCAGGTTTCCGTTTGCGGTGGGGAGGCAAGCTGAGTGGGCGAATTTGATGTGCGCAATCTGTATGTCTCAGCCGCCGGAGGCTCCAGCCAGCGCCTCAGTCGAGTTTCGCCATTTTATTGCTTGTTGTTTGCAGAGGGAGCCTGGGAAGAGATGGAATGCTAACCAGTTGTTACAGCACGCATATATAACACAGCAAAAGCAGAACCACCACTCTACTCATCCGCTCCTCCACCATCCTCCTCCGCGATTTCAACCTCCTTAA 1014 53.35 MKPVQQPPAATRRLRRPDLTLPLPKRDPLLAVPLPLPPPSNSAPSSTAYRHQFSFSELQRINRIGSGNGGTVYKVIHRPTGQLYALKVIYGNHDDSVRRQICREIEILRGADNPYIVKCIDMFDHNGEIQILLEYMDKGSLEGTHIPQEHHLSDLARQILSGLAYLHSRRIVHRDIKPSNLLINARKQVKIADFGVGKILDQTMDPCNSAVGTIAYMSPERINSDLNQGQYDGYAGDIWSLGVSILEFYLGRFPFAVGRQAEWANLMCAICMSQPPEAPASASVEFRHFIACCLQREPGKRWNANQLLQHAYITQQKQNHHSTHPLLHHPPPRFQPP 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 10617046 10618059 - Bma004448.1 Bma10g00703 89766

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g00703 337 Pfam Protein kinase domain 59 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma10g00703 337 MobiDBLite consensus disorder prediction 1 25 - -
Bma10g00703 337 ProSiteProfiles Protein kinase domain profile. 58 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma10g00703 337 ProSitePatterns Protein kinases ATP-binding region signature. 64 87 IPR017441 GO:0005524
Bma10g00703 337 ProSitePatterns Serine/Threonine protein kinases active-site signature. 171 183 IPR008271 GO:0004672|GO:0006468
Bma10g00703 337 Gene3D Transferase(Phosphotransferase) domain 1 139 327 - -
Bma10g00703 337 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 12 332 - -
Bma10g00703 337 SUPERFAMILY Protein kinase-like (PK-like) 57 334 IPR011009 -
Bma10g00703 337 Gene3D Phosphorylase Kinase; domain 1 40 137 - -
Bma10g00703 337 SMART serkin_6 58 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma10g00703 337 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4 12 332 - -
Bma10g00703 337 CDD PKc_MAPKK_plant_like 56 315 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g00703 K13413 MKK4_5; mitogen-activated protein kinase kinase 4/5 [EC:2.7.12.2] - csv:101219669 477.633
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma10g00703 Bma-Chr10:10617046 Bma11g00589 Bma-Chr11:8789921 1.98E-52 dispersed
Bma10g00703 Bma-Chr10:10617046 Bma02g00241 Bma-Chr2:2518061 7.56E-37 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi9g955 . . . . . . Bma10g00703 . . . . . . Car14g01085 . . . . . . . . . . Cla07g01350 Cam07g1143 Cec07g1538 Cco07g1499 Clacu07g1422 Cmu07g1398 Cre07g1779 Cone20ag1378 . . . . . . . . . . . . . . . . . . . . . . . Cpe03g01040 . . . . . . . . . . . . . . Lsi07g00631 Csa03g02812 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma06g00881 . 56 384 MAP Kinase Kinase Gene Family AT4G26070 61.1 1.4e-118 422.9
Bma01g00211 . 26 374 MAP Kinase Kinase Gene Family AT4G26070 52.8 1.7e-100 362.8
Bma11g00589 . 27 266 MAP Kinase Kinase Gene Family AT4G26070 70.8 6.9e-97 350.9
Bma06g00881 . 38 357 MAP Kinase Kinase Gene Family AT4G29810 62.0 2.3e-116 415.6
Bma11g00589 . 1 266 MAP Kinase Kinase Gene Family AT4G29810 70.9 4.1e-110 394.8
Bma01g00211 . 10 348 MAP Kinase Kinase Gene Family AT4G29810 55.0 1.6e-101 366.3
Bma14g01892 . 36 518 MAP Kinase Kinase Gene Family AT5G40440 77.4 1.8e-226 781.9
Bma14g01928 . 36 518 MAP Kinase Kinase Gene Family AT5G40440 77.4 1.8e-226 781.9
Bma10g00703 . 1 333 MAP Kinase Kinase Gene Family AT1G51660 67.6 2.9e-133 471.9
Bma10g00703 . 1 333 MAP Kinase Kinase Gene Family AT3G21220 66.7 7.0e-129 457.2
Bma01g00211 . 1 378 MAP Kinase Kinase Gene Family AT5G56580 79.4 2.8e-165 578.2
Bma06g00881 . 39 372 MAP Kinase Kinase Gene Family AT5G56580 58.3 2.3e-111 399.1
Bma11g00589 . 16 266 MAP Kinase Kinase Gene Family AT5G56580 61.9 1.4e-87 320.1
Bma10g00703 . 34 315 MAP Kinase Kinase Gene Family AT1G73500 50.2 5.9e-79 291.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009405 0 1 0 1 0 1 2 1 1 1 1 1 2 1 1 1 1 3 2 1 1 1 1 1 1 1 1 2 1 1 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66740 PF00069 Pkinase 1.10E-64 CL0016 Bma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma10g00703 Bma_Chr10 FPKM 19.706137 19.025002 15.085 12.698215 30.226089 31.056671 26.829672 24.552965 23.231369 23.950737