Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g00705 ATGACCGACGTCGAGCATTTGACCGCCGGAGTCCAAGATTCCGGCCACCAACCGCCCATCCTCAAGAGAAACAGGAAGAAACTCTTGTTCTGGGCTCTCTCTGCTATTCTACTTATTTCCGTTGTCATCGGAATTGCAGTAGGAGTAGAGTCGAGAAAGAAGCCCGACGAGATTGAGACTTCTCCTTCCCATTCTATAATCAAAACCTCTTGCAGCTCCACTCTGTACCCCGAGTTATGCTTCTCCACACTGACTTCTGTAGACAGAGCCAGCGAAAAGGTCTCCGGCCCGAAAGACGTCATCGAACTGGCGTTAAATATCACGACGGAAGCAGTGAAACAGAATTATTTAGCCATTAAAAAGCTTACGACTCGAAAAGGCCTGACCAAGCGCGAGAAGTGTGCTCTCAATGATTGCCTGGACAACATGGACGACACCATCTACGAGCTTCACAAGGCTGTAGAGGATCTCCATTTGTACCCAACCAAGAAATCTCTGTTCCAGCACGCCGACGACCTTAAAACTTTGCTCAGCTCAACAATCACCAACCAGGAGTCTTGCCTGGACGGGTTCTCTCACGACGATGCTGACAGAAAGGTGAGGAAGGAGCTGCTAAAGTCAGAGATTCATATCGAGAAAATGTGCAGCAATGTCTTGGCGATGATTAAGAACATGACAGACACTGACATAATCAACGAGAGTAAAATGATGGGGAGGAAAAATCTGATGGAGAACGTCGGTCACGACGACATAAAGTGGCTGGAATGGCTTTCGGCTGCCGACCGGCGGCTTTTGCAGTCGTCCTCAGTAACACCCAACGTAGTGGTGGCAGCCGACGGCAGCGGGAATTACCGGACAGTCTCGGCTGCAGTGGCAGCCGCTCCCGGTGGTTGGGAAAGATTTCTAGCAAGAGATATTACCTTCCAAAACACGGCCGGCCCATCAAAGCACCAGGCGGTGGCGCTTCGCGTCGGGTCCGATCTCTCTGCGTTTTACCGATGTGACATGCTTGCCTACCAAGACACCCTCTACGTCCACTCCAACCGTCAATTCTTCATAGAATGTTTCATCGCCGGCACCGTAGATTTCATCTTCGGCAACGGCGCCGCCGTCTTGCAAAACTGCGACATCCATGCGCGTCGACCGAACTCCGGCCAAAAGAACATGGTCACGGCCCAAGGCCGGACTGACCCGAACCAAAACACTGGCATTGTAATCCAGAAATGTAGAATCGGCGCCACCTCCGACCTCAGGCCTGTTCAGAGCAGTTTCCCAACTTACCTGGGAAGACCATGGAAGGAATACTCAAGGACGGTGGTTATGCAAACGTCGATAAGTAACGTCATAAACCCAGCCGGATGGCACATCTGGGACGGGACTTTCGCACTCAACACCCTGTTTTACGGCGAGTACATGAACACGGGGGCCGGGGCTGCCACGTCGAAGAGGGTAAGTTGGAAAGGATTCAAGGTGATCACCAGTGCAAGTGAAGCTCAGGCCTTCACTCCGGGAAGGTTCGTCGCCGGCGGTAGTTGGTTGAGTGGCACTGGTTTTCCATTCTCGCTGGGTCTGTAG 1575 52.19 MTDVEHLTAGVQDSGHQPPILKRNRKKLLFWALSAILLISVVIGIAVGVESRKKPDEIETSPSHSIIKTSCSSTLYPELCFSTLTSVDRASEKVSGPKDVIELALNITTEAVKQNYLAIKKLTTRKGLTKREKCALNDCLDNMDDTIYELHKAVEDLHLYPTKKSLFQHADDLKTLLSSTITNQESCLDGFSHDDADRKVRKELLKSEIHIEKMCSNVLAMIKNMTDTDIINESKMMGRKNLMENVGHDDIKWLEWLSAADRRLLQSSSVTPNVVVAADGSGNYRTVSAAVAAAPGGWERFLARDITFQNTAGPSKHQAVALRVGSDLSAFYRCDMLAYQDTLYVHSNRQFFIECFIAGTVDFIFGNGAAVLQNCDIHARRPNSGQKNMVTAQGRTDPNQNTGIVIQKCRIGATSDLRPVQSSFPTYLGRPWKEYSRTVVMQTSISNVINPAGWHIWDGTFALNTLFYGEYMNTGAGAATSKRVSWKGFKVITSASEAQAFTPGRFVAGGSWLSGTGFPFSLGL 524
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 10678874 10681823 + Bma004452.1 Bma10g00705 89768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g00705 524 ProSitePatterns Pectinesterase signature 2. 357 366 IPR033131 -
Bma10g00705 524 PANTHER PECTINESTERASE 299 523 - -
Bma10g00705 524 PANTHER PECTINESTERASE 32 297 - -
Bma10g00705 524 PANTHER PECTINESTERASE 299 523 - -
Bma10g00705 524 PANTHER PECTINESTERASE 32 297 - -
Bma10g00705 524 TIGRFAM PME_inhib: pectinesterase inhibitor domain 54 225 IPR006501 GO:0004857
Bma10g00705 524 Gene3D Invertase/pectin methylesterase inhibitor family protein 63 226 IPR035513 -
Bma10g00705 524 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 65 226 IPR035513 -
Bma10g00705 524 Pfam Plant invertase/pectin methylesterase inhibitor 66 221 IPR006501 GO:0004857
Bma10g00705 524 SUPERFAMILY Pectin lyase-like 270 523 IPR011050 -
Bma10g00705 524 SMART PMEI_2 62 221 IPR006501 GO:0004857
Bma10g00705 524 CDD PMEI-like_3 69 226 - -
Bma10g00705 524 Gene3D - 297 524 IPR012334 -
Bma10g00705 524 Pfam Pectinesterase 299 509 IPR000070 GO:0030599|GO:0042545
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma10g00705 Bma13g00656 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma10g00705 Bma-Chr10:10678874 Bma15g00046 Bma-Chr15:641122 4.60E-101 dispersed
Bma05g00270 Bma-Chr5:7600164 Bma10g00705 Bma-Chr10:10678874 2.63E-78 transposed
Bma10g00665 Bma-Chr10:9604969 Bma10g00705 Bma-Chr10:10678874 5.88E-171 wgd
Bma10g00705 Bma-Chr10:10678874 Bma13g01193 Bma-Chr13:45200804 1.35E-71 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g00705 K01051 - jre:109004988 695.271