Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g00710 ATGTTTCATCCCCAAGGAGCTGCTAGACACACTTGCAGTCTCCTGGCAGTAACTTGTGGAAATAGTCTCCAAGAAAAGTATAATAGGGATGTTTTCGAGGATCAGCTTCGGTTTCCTTTCCCGGCGTTAGTTTCTTCCTGCCGTTTAGAGGTCAAGATACTTACTAATCCAAGCAAAAATGAAATTTGTAAAGTTATTGATTCGTACCAACCGAATCTCTTATATTTGCAAGGAGAACAACTTGAAAATGATGAAGTGGGCTCTTTGGTCTTGGCAGATGTGGATTTGTCCTCTGTAGAAGCTATTCATGATCTTTTTCGAACCACACTTCCCACCACTGTTTATTTGGAAATCCCAAATGGAGACCAATTGGCTGAAGCACTTCACTTCAAGGGCATTCCTTACGTGATATATTGGAAGAACACATTTTCACGATATACTTCCTGCCACTTTCGTAATGCATTTCTTTCTGTGGTTCAAAGTTCATCCACCCATATATGGGATGCTTTTCAACTTGGGCTGGCATCCTTTAGGATCTACTGTTTGCGAAGCTCCCATGGTCGTAGTGATAGACTTAGTGAAGAGCTTGAGCCACATCTTCTTGGGGAGCCGTCTAAGATAAATGTAGAGCCTCCTGAGGTGGAGGTAGGAGAAGATGAAGATGGTTCTCCCCCACCACTTCCCACCATAAACATTCACAATGATGATGTAACCACTAGATTTCTCATTTGCGGCGAATCATCTACGGTGGATGAAAGCTTATTGGGATCTTTGGAGGATGGCCTTAATGCCCTCTTAAACATTGAAGTAAGTGACACCAGACTGATCAATACTCATTCTGTCTTCTCTGTATCATGCAGTGCACCTCCACCATCTCTTCAGGCAGGGACATTTTCTCGTGGTGTTGTGACAATGAGATGTGACTTATCAACTAGTAGTGCTGCCCACATCTCACTTTTGGTGTCTGGTAGTGCACGGACATGTTTTGATGATCAGCTTTTGGAAAATCATATCAAAAATGAAATAATCGAAAATGCTCTTTTAGTTCGCTCTATACTGGACAGTGATGGAAACAAAGTTCCTTTATCAGAACCTCGGAAATCTGAGTCAATCGCTTGTGGTGCAACAGTGTTTGAGGTTTCCATGAAGGTCCCTTCGTGGGCGTTACAGGTCGTGTTGAGGCAGTTGGCACCAGACTTTACTTATCGTAGTTTAGTAGCACTTGGCATTGCAAGTGTTCAGGGATTGCCCGTAGCTTCGTTTGAGAAAGAGGATGCGGAGCGGCTGCTTTTTTTCTGTTCTAGTCATGAAAAGGAAATAGTTTTAGATAATTTGAGGTTTTCCAACTCCCCAAGCTGGTTGAAGCCACCAGTTCCTAGCAGAAAGAGATGCCAACTAAGCAATGGGAAAATCATCGGTTTATTCGATAGTCCTGCTTATGAAAATATCCTTCCCGCCTGCAAAATAAAAGAAGAAAACCAGGATGGTAGCGCAACAAATGGCTTTAAGACGACTACTCTACCTGCTCTGCAGAGATTCAGAGTAGCTGCTTTAAGGCCCATTCCTCGCAGCCATCGTCATAAAATTACACCCTTCTCTGGAATAACCGAGGCAAATGGGCAAAATGGAGGCCAGATTAAAGCTAATATGCCTGTGGTTTCTTCCACTAAACAGTTTACTGCATTGGCAACACAGAGAAAGACATTTTCAAACTTGTCTCAGTCTAAGCAAGTTATTTCCTTGAATCCTCTACCTTTAAAGAAACATGGTTGTGACAGGAGCTCAATACATACTTGCTGTGAGGAGGACTTTCTGAAGGACGTGATGGAGTTTCTAATCTTTCGAGGACATAATCGACTCATTCCTCAAGGTGGGTTTGCTGAGTTTCCTGAGGCCATACTAAATGGGAAGCGTCTAGACCTGTACAATCTGTACAAGGAGGTGGTTACAAGAGGAGGCTTTCATGTAGGTAATGGTATCAACTGGAAAGGTCAAATCTTTTCAAAGATGCGCAATTACACCATGACAAATAGAATGACAGGTGTGGGAAATACGTTGAAAAGACATTACGAGACGTATCTTTTAGAGTATGAGTTGGCTCATGACGATGTAGATGGGGAGTGTTGCTTGTTATGTCACAGTAGTGCGGCGGGGGATTGGGTGAACTGTGGCATATGTGGTGAGTGGGCCCATTTTGGCTGCGATAGACGGCAGGGCCTCGGTGCCTTTAAGGACTATGCGAAAACGGACGGCCTAGAATACATATGTCCGCATTGTAGTGTCGCAAACTTCAAAAAGAAATCACAGAAAATTGTGAATGGGTACTCTCAAGGC 2334 43.36 MFHPQGAARHTCSLLAVTCGNSLQEKYNRDVFEDQLRFPFPALVSSCRLEVKILTNPSKNEICKVIDSYQPNLLYLQGEQLENDEVGSLVLADVDLSSVEAIHDLFRTTLPTTVYLEIPNGDQLAEALHFKGIPYVIYWKNTFSRYTSCHFRNAFLSVVQSSSTHIWDAFQLGLASFRIYCLRSSHGRSDRLSEELEPHLLGEPSKINVEPPEVEVGEDEDGSPPPLPTINIHNDDVTTRFLICGESSTVDESLLGSLEDGLNALLNIEVSDTRLINTHSVFSVSCSAPPPSLQAGTFSRGVVTMRCDLSTSSAAHISLLVSGSARTCFDDQLLENHIKNEIIENALLVRSILDSDGNKVPLSEPRKSESIACGATVFEVSMKVPSWALQVVLRQLAPDFTYRSLVALGIASVQGLPVASFEKEDAERLLFFCSSHEKEIVLDNLRFSNSPSWLKPPVPSRKRCQLSNGKIIGLFDSPAYENILPACKIKEENQDGSATNGFKTTTLPALQRFRVAALRPIPRSHRHKITPFSGITEANGQNGGQIKANMPVVSSTKQFTALATQRKTFSNLSQSKQVISLNPLPLKKHGCDRSSIHTCCEEDFLKDVMEFLIFRGHNRLIPQGGFAEFPEAILNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMRNYTMTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYICPHCSVANFKKKSQKIVNGYSQG 778
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 10830525 10835453 + Bma030374 Bma10g00710 89773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g00710 778 Pfam ARID/BRIGHT DNA binding domain 601 698 IPR001606 GO:0003677
Bma10g00710 778 CDD ARID 601 698 - -
Bma10g00710 778 CDD PHD_ARID4_like 708 759 - -
Bma10g00710 778 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 1 775 IPR042293 -
Bma10g00710 778 MobiDBLite consensus disorder prediction 203 230 - -
Bma10g00710 778 Gene3D - 593 701 IPR036431 GO:0003677
Bma10g00710 778 SMART ARID_2 595 698 - -
Bma10g00710 778 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 702 764 IPR013083 -
Bma10g00710 778 ProSiteProfiles ARID domain profile. 598 702 IPR001606 GO:0003677
Bma10g00710 778 SUPERFAMILY ARID-like 601 713 IPR036431 GO:0003677
Bma10g00710 778 SUPERFAMILY FYVE/PHD zinc finger 701 766 IPR011011 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma10g00669 Bma-Chr10:9674947 Bma10g00710 Bma-Chr10:10830525 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57947 PF01388 ARID 1.60E-13 CL0123 Bma TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g00710 - - zju:107435388 1095.88