Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g00710 ATGTTTCATCCCCAAGGAGCTGCTAGACACACTTGCAGTCTCCTGGCAGTAACTTGTGGAAATAGTCTCCAAGAAAAGTATAATAGGGATGTTTTCGAGGATCAGCTTCGGTTTCCTTTCCCGGCGTTAGTTTCTTCCTGCCGTTTAGAGGTCAAGATACTTACTAATCCAAGCAAAAATGAAATTTGTAAAGTTATTGATTCGTACCAACCGAATCTCTTATATTTGCAAGGAGAACAACTTGAAAATGATGAAGTGGGCTCTTTGGTCTTGGCAGATGTGGATTTGTCCTCTGTAGAAGCTATTCATGATCTTTTTCGAACCACACTTCCCACCACTGTTTATTTGGAAATCCCAAATGGAGACCAATTGGCTGAAGCACTTCACTTCAAGGGCATTCCTTACGTGATATATTGGAAGAACACATTTTCACGATATACTTCCTGCCACTTTCGTAATGCATTTCTTTCTGTGGTTCAAAGTTCATCCACCCATATATGGGATGCTTTTCAACTTGGGCTGGCATCCTTTAGGATCTACTGTTTGCGAAGCTCCCATGGTCGTAGTGATAGACTTAGTGAAGAGCTTGAGCCACATCTTCTTGGGGAGCCGTCTAAGATAAATGTAGAGCCTCCTGAGGTGGAGGTAGGAGAAGATGAAGATGGTTCTCCCCCACCACTTCCCACCATAAACATTCACAATGATGATGTAACCACTAGATTTCTCATTTGCGGCGAATCATCTACGGTGGATGAAAGCTTATTGGGATCTTTGGAGGATGGCCTTAATGCCCTCTTAAACATTGAAGTAAGTGACACCAGACTGATCAATACTCATTCTGTCTTCTCTGTATCATGCAGTGCACCTCCACCATCTCTTCAGGCAGGGACATTTTCTCGTGGTGTTGTGACAATGAGATGTGACTTATCAACTAGTAGTGCTGCCCACATCTCACTTTTGGTGTCTGGTAGTGCACGGACATGTTTTGATGATCAGCTTTTGGAAAATCATATCAAAAATGAAATAATCGAAAATGCTCTTTTAGTTCGCTCTATACTGGACAGTGATGGAAACAAAGTTCCTTTATCAGAACCTCGGAAATCTGAGTCAATCGCTTGTGGTGCAACAGTGTTTGAGGTTTCCATGAAGGTCCCTTCGTGGGCGTTACAGGTCGTGTTGAGGCAGTTGGCACCAGACTTTACTTATCGTAGTTTAGTAGCACTTGGCATTGCAAGTGTTCAGGGATTGCCCGTAGCTTCGTTTGAGAAAGAGGATGCGGAGCGGCTGCTTTTTTTCTGTTCTAGTCATGAAAAGGAAATAGTTTTAGATAATTTGAGGTTTTCCAACTCCCCAAGCTGGTTGAAGCCACCAGTTCCTAGCAGAAAGAGATGCCAACTAAGCAATGGGAAAATCATCGGTTTATTCGATAGTCCTGCTTATGAAAATATCCTTCCCGCCTGCAAAATAAAAGAAGAAAACCAGGATGGTAGCGCAACAAATGGCTTTAAGACGACTACTCTACCTGCTCTGCAGAGATTCAGAGTAGCTGCTTTAAGGCCCATTCCTCGCAGCCATCGTCATAAAATTACACCCTTCTCTGGAATAACCGAGGCAAATGGGCAAAATGGAGGCCAGATTAAAGCTAATATGCCTGTGGTTTCTTCCACTAAACAGTTTACTGCATTGGCAACACAGAGAAAGACATTTTCAAACTTGTCTCAGTCTAAGCAAGTTATTTCCTTGAATCCTCTACCTTTAAAGAAACATGGTTGTGACAGGAGCTCAATACATACTTGCTGTGAGGAGGACTTTCTGAAGGACGTGATGGAGTTTCTAATCTTTCGAGGACATAATCGACTCATTCCTCAAGGTGGGTTTGCTGAGTTTCCTGAGGCCATACTAAATGGGAAGCGTCTAGACCTGTACAATCTGTACAAGGAGGTGGTTACAAGAGGAGGCTTTCATGTAGGTAATGGTATCAACTGGAAAGGTCAAATCTTTTCAAAGATGCGCAATTACACCATGACAAATAGAATGACAGGTGTGGGAAATACGTTGAAAAGACATTACGAGACGTATCTTTTAGAGTATGAGTTGGCTCATGACGATGTAGATGGGGAGTGTTGCTTGTTATGTCACAGTAGTGCGGCGGGGGATTGGGTGAACTGTGGCATATGTGGTGAGTGGGCCCATTTTGGCTGCGATAGACGGCAGGGCCTCGGTGCCTTTAAGGACTATGCGAAAACGGACGGCCTAGAATACATATGTCCGCATTGTAGTGTCGCAAACTTCAAAAAGAAATCACAGAAAATTGTGAATGGGTACTCTCAAGGC 2334 43.36 MFHPQGAARHTCSLLAVTCGNSLQEKYNRDVFEDQLRFPFPALVSSCRLEVKILTNPSKNEICKVIDSYQPNLLYLQGEQLENDEVGSLVLADVDLSSVEAIHDLFRTTLPTTVYLEIPNGDQLAEALHFKGIPYVIYWKNTFSRYTSCHFRNAFLSVVQSSSTHIWDAFQLGLASFRIYCLRSSHGRSDRLSEELEPHLLGEPSKINVEPPEVEVGEDEDGSPPPLPTINIHNDDVTTRFLICGESSTVDESLLGSLEDGLNALLNIEVSDTRLINTHSVFSVSCSAPPPSLQAGTFSRGVVTMRCDLSTSSAAHISLLVSGSARTCFDDQLLENHIKNEIIENALLVRSILDSDGNKVPLSEPRKSESIACGATVFEVSMKVPSWALQVVLRQLAPDFTYRSLVALGIASVQGLPVASFEKEDAERLLFFCSSHEKEIVLDNLRFSNSPSWLKPPVPSRKRCQLSNGKIIGLFDSPAYENILPACKIKEENQDGSATNGFKTTTLPALQRFRVAALRPIPRSHRHKITPFSGITEANGQNGGQIKANMPVVSSTKQFTALATQRKTFSNLSQSKQVISLNPLPLKKHGCDRSSIHTCCEEDFLKDVMEFLIFRGHNRLIPQGGFAEFPEAILNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMRNYTMTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYICPHCSVANFKKKSQKIVNGYSQG 778
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 10830525 10835453 + Bma030374 Bma10g00710 89773

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g00710 778 Pfam ARID/BRIGHT DNA binding domain 601 698 IPR001606 GO:0003677
Bma10g00710 778 CDD ARID 601 698 - -
Bma10g00710 778 CDD PHD_ARID4_like 708 759 - -
Bma10g00710 778 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 1 775 IPR042293 -
Bma10g00710 778 MobiDBLite consensus disorder prediction 203 230 - -
Bma10g00710 778 Gene3D - 593 701 IPR036431 GO:0003677
Bma10g00710 778 SMART ARID_2 595 698 - -
Bma10g00710 778 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 702 764 IPR013083 -
Bma10g00710 778 ProSiteProfiles ARID domain profile. 598 702 IPR001606 GO:0003677
Bma10g00710 778 SUPERFAMILY ARID-like 601 713 IPR036431 GO:0003677
Bma10g00710 778 SUPERFAMILY FYVE/PHD zinc finger 701 766 IPR011011 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g00710 - - - zju:107435388 1095.88
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma10g00669 Bma-Chr10:9674947 Bma10g00710 Bma-Chr10:10830525 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma05g01290 BCT 27 340 ARID Transcription Factor Family AT1G04880 60.8 1.6e-98 356.7
Bma04g01053 BCT 27 272 ARID Transcription Factor Family AT1G04880 55.5 2.1e-69 260.0
Bma01g00689 . 151 430 ARID Transcription Factor Family AT1G20910 66.4 1.2e-100 363.6
Bma15g00913 . 37 329 ARID Transcription Factor Family AT1G20910 53.8 3.0e-80 295.8
Bma01g02389 . 1 295 ARID Transcription Factor Family AT1G76110 59.4 8.9e-89 323.9
Bma01g00689 . 119 460 ARID Transcription Factor Family AT1G76510 67.0 2.4e-123 439.1
Bma15g00913 . 14 359 ARID Transcription Factor Family AT1G76510 55.7 4.5e-101 365.2
Bma13g01143 . 42 324 ARID Transcription Factor Family AT3G13350 52.2 1.7e-81 299.7
Bma10g00669 . 2 801 ARID Transcription Factor Family AT3G43240 55.3 6.2e-252 867.1
Bma10g00710 . 1 774 ARID Transcription Factor Family AT3G43240 56.6 6.2e-252 867.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001323 3 5 2 2 2 2 3 2 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 2 2 2 9 3 2 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57947 PF01388 ARID 1.60E-13 CL0123 Bma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma10g00710 Bma_Chr10 FPKM 7.672243 9.553144 2.317771 2.416868 39.138462 33.939056 40.331951 0.80002 0.267559 0.666399