Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g00774 ATGGGCGTGGACATGTCGAATAATCAATCGAATTCACGAACCAAAGACTTTTTTGCCTCTCCTGCTCTCTCTCTCAGCCTTGCCGGGATTTTTCGTGATGCCGAAGGGACGGCTGCAGCGGCCACTATGGAGGTGGAGGAAGGAGACGAGGAGAGCGGGGGAGGAGGCCGTCGAGAAGATACGGTGGAGATTAGTAGTGAGAATTCGGGTCCCGGTAGATCAAGATCGGAAGATGAATTTGATCCCGAGGGAGACCATGATGACGAGGATGAAGATGGAGACAAGAATAAGAAGAAGAAAAGGAAGAAGTACCACAGGCATACAGCAGAGCAAATCCGAGAAATGGAAGCGCTATTCAAAGAGTCGCCTCATCCAGATGAGAAGCAGAGGCAGCAACTGAGCAAGCAATTAGGCTTAGCTCCAAGACAAGTCAAATTCTGGTTCCAAAATCGAAGAACACAAATCAAAGCGATTCAAGAGCGCCACGAAAACACGTTACTGAAAACGGAGATGGAGAAGCTGAAAGACGAAAATAAATCGATGAGAGAGTCGATAAACCGATCCTCTTGTCCTAATTGCGGCACTGCAACTACTAGTAGAGACACTGCCTTGACTACCGAGGAGCAACAGCTTCGGCTTGAAAATGCGAAACTCAAAGCCGAGGTGGAAAAACTGAAGACTGTTCTCGGAAGATACCCTCCAGGGGGGACGTCATCTCCGTCGTGTTCAGCCGGCAACGATCAAGAAAACCGAAGCTCCTTGGACTTCTACACTGGGATTTTCGGACTCGAGAAGTCGAGAATCATAGAAATAGTCAATCAAGCAATGGACGAGCTAAAAAAGATGGCCACAGCCGGAGAACCACTTTGGATTCGGAGTGTCGAGACCGGGCGAGAAATACTAAATTATGACGAGTACATGAAGGAATTCTCCGTCGATAACTCCAGCAACGGTAGGCCCAAGCAATCCATCGAGGCCTCCAGAGAGACCGGAATTGTCTTCCTGGACCTATCGCGACTAGTGCAGAGTTTCGTAGATGTGAATCAGTGGAAGGAAATGTTTCCATTTATGATCTCAAAAGCCGCTACAGTCGACATTATCAACCATGGCGAAGGAGCAAACAAGAATGGATCAGTTCAACTGATGTTTGCCGAGCTGCAAATGCTTACTCCGTTGGTGGGCACAAGGGAGGTCTACTTTATCAGATACTGCAAGCAGCTGAGCCCGGAACAGTGGGCAATTGTCGACGTCTCCATCGACAAAGTCGAAGATAACATTGATGCTTCTTTAGTGAAATGCCGGAAGCGTCCATCCGGTTGCATCATCGAAGATAAATCAAATGGTCACTGCAAGGTGATTTGGGTAGAGCATCTAGAGTGCCAGAAAAACACAGTTCATTCCATGTACCGAACAGTCGTTAACAGCGGTTTGGCCTTTGGGGCGAGGCACTGGATGACTACGCTCCAGCTGCAATGCGAGCGGCTTGTTTTTTTCATGGCCACCAACGTTCCCATGAAGGATTCTACAGGAGTTTCCACGCTGGCTGGGAGGAAAAGCATACTGAAGTTGGCTCAAAGAATGACATGTAGCTTTAGTCACGCCATTGGAGCCTCAAGCTTCCACACATGGAATAAGGTCTCAAGCAAGACAGGAGAAGACATAAGAATTGCTTCTAGAAAGAACTTGAATGACCCGGCTGAGCCTCTCGGGTTGATCTTATGCGCAGTTTCATCTGTCTGGCTTCCCGTGTCTCCTCTCGTTCTGTTTGATTTCTTACGAGACGAAACTCACCGAAACGAGTGGGATATCATCTTCACCGGAGGCCAAGCGCAATCCATCGCTAACTTATCCAAAGGCCAAGATCGAGGCAATGCAGTTGCCATCCAAGTAAACGATAAAATCGAAGAGAATAGCATGTGGATTCTCCAAGACAGCTGCACAAACACATTCGAATCCTTGGTGGTCTATGCTCAAGTAGACATCACAGGCATGCAGTCAGTAATGACCGGCTGCGACTCTAGCAGCATCGCAGTGTTGCCTTCCGGTTTCTCGATTCTCCCGGACGGGCTCGAATCGAGACCTCTAGTCATTACTTCGAGGAAAGAGGAGAAGAGTTCAGAAGGAGGATCTTTGCTCACAATAGCATTCCAAATCCTCACCAACACCTCTCCTACTGCCAAACTAACGATGGAGTCAGTCGAGTACGTCAACAATGTCATCTCATGTACTCTGAGAAATATCAGAACAAGCTTGCAGTGCGAAGATGGGTGA 2271 48.17 MGVDMSNNQSNSRTKDFFASPALSLSLAGIFRDAEGTAAAATMEVEEGDEESGGGGRREDTVEISSENSGPGRSRSEDEFDPEGDHDDEDEDGDKNKKKKRKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKAIQERHENTLLKTEMEKLKDENKSMRESINRSSCPNCGTATTSRDTALTTEEQQLRLENAKLKAEVEKLKTVLGRYPPGGTSSPSCSAGNDQENRSSLDFYTGIFGLEKSRIIEIVNQAMDELKKMATAGEPLWIRSVETGREILNYDEYMKEFSVDNSSNGRPKQSIEASRETGIVFLDLSRLVQSFVDVNQWKEMFPFMISKAATVDIINHGEGANKNGSVQLMFAELQMLTPLVGTREVYFIRYCKQLSPEQWAIVDVSIDKVEDNIDASLVKCRKRPSGCIIEDKSNGHCKVIWVEHLECQKNTVHSMYRTVVNSGLAFGARHWMTTLQLQCERLVFFMATNVPMKDSTGVSTLAGRKSILKLAQRMTCSFSHAIGASSFHTWNKVSSKTGEDIRIASRKNLNDPAEPLGLILCAVSSVWLPVSPLVLFDFLRDETHRNEWDIIFTGGQAQSIANLSKGQDRGNAVAIQVNDKIEENSMWILQDSCTNTFESLVVYAQVDITGMQSVMTGCDSSSIAVLPSGFSILPDGLESRPLVITSRKEEKSSEGGSLLTIAFQILTNTSPTAKLTMESVEYVNNVISCTLRNIRTSLQCEDG 756
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 12466019 12469294 + Bma004548.1 Bma10g00774 89837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g00774 756 ProSitePatterns 'Homeobox' domain signature. 133 156 IPR017970 GO:0000981|GO:0006355
Bma10g00774 756 Coils Coil 157 184 - -
Bma10g00774 756 SUPERFAMILY Bet v1-like 538 743 - -
Bma10g00774 756 SUPERFAMILY Bet v1-like 263 494 - -
Bma10g00774 756 MobiDBLite consensus disorder prediction 182 201 - -
Bma10g00774 756 CDD START_ArGLABRA2_like 265 493 - -
Bma10g00774 756 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN GLABRA 2 16 753 - -
Bma10g00774 756 MobiDBLite consensus disorder prediction 234 248 - -
Bma10g00774 756 Pfam START domain 271 494 IPR002913 GO:0008289
Bma10g00774 756 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 16 753 IPR042160 -
Bma10g00774 756 ProSiteProfiles 'Homeobox' domain profile. 98 158 IPR001356 GO:0003677
Bma10g00774 756 SUPERFAMILY Homeodomain-like 88 159 IPR009057 -
Bma10g00774 756 SMART HOX_1 100 162 IPR001356 GO:0003677
Bma10g00774 756 MobiDBLite consensus disorder prediction 184 201 - -
Bma10g00774 756 Gene3D - 269 489 IPR023393 -
Bma10g00774 756 Pfam Homeodomain 101 156 IPR001356 GO:0003677
Bma10g00774 756 Coils Coil 208 228 - -
Bma10g00774 756 MobiDBLite consensus disorder prediction 37 109 - -
Bma10g00774 756 Gene3D - 86 172 - -
Bma10g00774 756 SMART START_1 270 494 IPR002913 GO:0008289
Bma10g00774 756 CDD homeodomain 105 156 IPR001356 GO:0003677
Bma10g00774 756 ProSiteProfiles START domain profile. 261 497 IPR002913 GO:0008289
Bma10g00774 756 MobiDBLite consensus disorder prediction 229 248 - -
Bma10g00774 756 MobiDBLite consensus disorder prediction 50 64 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma10g00774 Bma15g00354 CCT
Bma10g00774 Bma15g00354 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma10g00774 Bma-Chr10:12466019 Bma12g00798 Bma-Chr12:37356095 0 dispersed
Bma10g00774 Bma-Chr10:12466019 Bma13g00826 Bma-Chr13:33125334 0 wgd
Bma10g00774 Bma-Chr10:12466019 Bma15g00354 Bma-Chr15:3785218 2.97E-13 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57954 PF01852 START 2.80E-55 CL0209 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g00774 K09338 - qsu:111988083 1224.92