Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma10g00774 | ATGGGCGTGGACATGTCGAATAATCAATCGAATTCACGAACCAAAGACTTTTTTGCCTCTCCTGCTCTCTCTCTCAGCCTTGCCGGGATTTTTCGTGATGCCGAAGGGACGGCTGCAGCGGCCACTATGGAGGTGGAGGAAGGAGACGAGGAGAGCGGGGGAGGAGGCCGTCGAGAAGATACGGTGGAGATTAGTAGTGAGAATTCGGGTCCCGGTAGATCAAGATCGGAAGATGAATTTGATCCCGAGGGAGACCATGATGACGAGGATGAAGATGGAGACAAGAATAAGAAGAAGAAAAGGAAGAAGTACCACAGGCATACAGCAGAGCAAATCCGAGAAATGGAAGCGCTATTCAAAGAGTCGCCTCATCCAGATGAGAAGCAGAGGCAGCAACTGAGCAAGCAATTAGGCTTAGCTCCAAGACAAGTCAAATTCTGGTTCCAAAATCGAAGAACACAAATCAAAGCGATTCAAGAGCGCCACGAAAACACGTTACTGAAAACGGAGATGGAGAAGCTGAAAGACGAAAATAAATCGATGAGAGAGTCGATAAACCGATCCTCTTGTCCTAATTGCGGCACTGCAACTACTAGTAGAGACACTGCCTTGACTACCGAGGAGCAACAGCTTCGGCTTGAAAATGCGAAACTCAAAGCCGAGGTGGAAAAACTGAAGACTGTTCTCGGAAGATACCCTCCAGGGGGGACGTCATCTCCGTCGTGTTCAGCCGGCAACGATCAAGAAAACCGAAGCTCCTTGGACTTCTACACTGGGATTTTCGGACTCGAGAAGTCGAGAATCATAGAAATAGTCAATCAAGCAATGGACGAGCTAAAAAAGATGGCCACAGCCGGAGAACCACTTTGGATTCGGAGTGTCGAGACCGGGCGAGAAATACTAAATTATGACGAGTACATGAAGGAATTCTCCGTCGATAACTCCAGCAACGGTAGGCCCAAGCAATCCATCGAGGCCTCCAGAGAGACCGGAATTGTCTTCCTGGACCTATCGCGACTAGTGCAGAGTTTCGTAGATGTGAATCAGTGGAAGGAAATGTTTCCATTTATGATCTCAAAAGCCGCTACAGTCGACATTATCAACCATGGCGAAGGAGCAAACAAGAATGGATCAGTTCAACTGATGTTTGCCGAGCTGCAAATGCTTACTCCGTTGGTGGGCACAAGGGAGGTCTACTTTATCAGATACTGCAAGCAGCTGAGCCCGGAACAGTGGGCAATTGTCGACGTCTCCATCGACAAAGTCGAAGATAACATTGATGCTTCTTTAGTGAAATGCCGGAAGCGTCCATCCGGTTGCATCATCGAAGATAAATCAAATGGTCACTGCAAGGTGATTTGGGTAGAGCATCTAGAGTGCCAGAAAAACACAGTTCATTCCATGTACCGAACAGTCGTTAACAGCGGTTTGGCCTTTGGGGCGAGGCACTGGATGACTACGCTCCAGCTGCAATGCGAGCGGCTTGTTTTTTTCATGGCCACCAACGTTCCCATGAAGGATTCTACAGGAGTTTCCACGCTGGCTGGGAGGAAAAGCATACTGAAGTTGGCTCAAAGAATGACATGTAGCTTTAGTCACGCCATTGGAGCCTCAAGCTTCCACACATGGAATAAGGTCTCAAGCAAGACAGGAGAAGACATAAGAATTGCTTCTAGAAAGAACTTGAATGACCCGGCTGAGCCTCTCGGGTTGATCTTATGCGCAGTTTCATCTGTCTGGCTTCCCGTGTCTCCTCTCGTTCTGTTTGATTTCTTACGAGACGAAACTCACCGAAACGAGTGGGATATCATCTTCACCGGAGGCCAAGCGCAATCCATCGCTAACTTATCCAAAGGCCAAGATCGAGGCAATGCAGTTGCCATCCAAGTAAACGATAAAATCGAAGAGAATAGCATGTGGATTCTCCAAGACAGCTGCACAAACACATTCGAATCCTTGGTGGTCTATGCTCAAGTAGACATCACAGGCATGCAGTCAGTAATGACCGGCTGCGACTCTAGCAGCATCGCAGTGTTGCCTTCCGGTTTCTCGATTCTCCCGGACGGGCTCGAATCGAGACCTCTAGTCATTACTTCGAGGAAAGAGGAGAAGAGTTCAGAAGGAGGATCTTTGCTCACAATAGCATTCCAAATCCTCACCAACACCTCTCCTACTGCCAAACTAACGATGGAGTCAGTCGAGTACGTCAACAATGTCATCTCATGTACTCTGAGAAATATCAGAACAAGCTTGCAGTGCGAAGATGGGTGA | 2271 | 48.17 | MGVDMSNNQSNSRTKDFFASPALSLSLAGIFRDAEGTAAAATMEVEEGDEESGGGGRREDTVEISSENSGPGRSRSEDEFDPEGDHDDEDEDGDKNKKKKRKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKAIQERHENTLLKTEMEKLKDENKSMRESINRSSCPNCGTATTSRDTALTTEEQQLRLENAKLKAEVEKLKTVLGRYPPGGTSSPSCSAGNDQENRSSLDFYTGIFGLEKSRIIEIVNQAMDELKKMATAGEPLWIRSVETGREILNYDEYMKEFSVDNSSNGRPKQSIEASRETGIVFLDLSRLVQSFVDVNQWKEMFPFMISKAATVDIINHGEGANKNGSVQLMFAELQMLTPLVGTREVYFIRYCKQLSPEQWAIVDVSIDKVEDNIDASLVKCRKRPSGCIIEDKSNGHCKVIWVEHLECQKNTVHSMYRTVVNSGLAFGARHWMTTLQLQCERLVFFMATNVPMKDSTGVSTLAGRKSILKLAQRMTCSFSHAIGASSFHTWNKVSSKTGEDIRIASRKNLNDPAEPLGLILCAVSSVWLPVSPLVLFDFLRDETHRNEWDIIFTGGQAQSIANLSKGQDRGNAVAIQVNDKIEENSMWILQDSCTNTFESLVVYAQVDITGMQSVMTGCDSSSIAVLPSGFSILPDGLESRPLVITSRKEEKSSEGGSLLTIAFQILTNTSPTAKLTMESVEYVNNVISCTLRNIRTSLQCEDG | 756 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 12466019 | 12469294 | + | Bma004548.1 | Bma10g00774 | 89837 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma10g00774 | 756 | ProSitePatterns | 'Homeobox' domain signature. | 133 | 156 | IPR017970 | GO:0000981|GO:0006355 | |
Bma10g00774 | 756 | Coils | Coil | 157 | 184 | - | - | |
Bma10g00774 | 756 | SUPERFAMILY | Bet v1-like | 538 | 743 | - | - | |
Bma10g00774 | 756 | SUPERFAMILY | Bet v1-like | 263 | 494 | - | - | |
Bma10g00774 | 756 | MobiDBLite | consensus disorder prediction | 182 | 201 | - | - | |
Bma10g00774 | 756 | CDD | START_ArGLABRA2_like | 265 | 493 | - | - | |
Bma10g00774 | 756 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN GLABRA 2 | 16 | 753 | - | - | |
Bma10g00774 | 756 | MobiDBLite | consensus disorder prediction | 234 | 248 | - | - | |
Bma10g00774 | 756 | Pfam | START domain | 271 | 494 | IPR002913 | GO:0008289 | |
Bma10g00774 | 756 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 | 16 | 753 | IPR042160 | - | |
Bma10g00774 | 756 | ProSiteProfiles | 'Homeobox' domain profile. | 98 | 158 | IPR001356 | GO:0003677 | |
Bma10g00774 | 756 | SUPERFAMILY | Homeodomain-like | 88 | 159 | IPR009057 | - | |
Bma10g00774 | 756 | SMART | HOX_1 | 100 | 162 | IPR001356 | GO:0003677 | |
Bma10g00774 | 756 | MobiDBLite | consensus disorder prediction | 184 | 201 | - | - | |
Bma10g00774 | 756 | Gene3D | - | 269 | 489 | IPR023393 | - | |
Bma10g00774 | 756 | Pfam | Homeodomain | 101 | 156 | IPR001356 | GO:0003677 | |
Bma10g00774 | 756 | Coils | Coil | 208 | 228 | - | - | |
Bma10g00774 | 756 | MobiDBLite | consensus disorder prediction | 37 | 109 | - | - | |
Bma10g00774 | 756 | Gene3D | - | 86 | 172 | - | - | |
Bma10g00774 | 756 | SMART | START_1 | 270 | 494 | IPR002913 | GO:0008289 | |
Bma10g00774 | 756 | CDD | homeodomain | 105 | 156 | IPR001356 | GO:0003677 | |
Bma10g00774 | 756 | ProSiteProfiles | START domain profile. | 261 | 497 | IPR002913 | GO:0008289 | |
Bma10g00774 | 756 | MobiDBLite | consensus disorder prediction | 229 | 248 | - | - | |
Bma10g00774 | 756 | MobiDBLite | consensus disorder prediction | 50 | 64 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bma10g00774 | Bma15g00354 | CCT | |
Bma10g00774 | Bma15g00354 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma10g00774 | Bma-Chr10:12466019 | Bma12g00798 | Bma-Chr12:37356095 | 0 | dispersed | |
Bma10g00774 | Bma-Chr10:12466019 | Bma13g00826 | Bma-Chr13:33125334 | 0 | wgd | |
Bma10g00774 | Bma-Chr10:12466019 | Bma15g00354 | Bma-Chr15:3785218 | 2.97E-13 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
57954 | PF01852 | START | 2.80E-55 | CL0209 | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma10g00774 | K09338 | - | qsu:111988083 | 1224.92 |