Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g00841 ATGGAGAAGAAGAAGTATCCCATTGGAGCAGACCATTATGCGCTGTATGAGGAAGTGGGGCATGGTGTTAGTGCTTCAGTGCGACGTGCTCTTTGCAGACCTTTTAACGAGATTGTCGCCATCAAGATTCTCGATTTTGAACGGGACAATATCGATCTGAACAATATATCTCGAGAAGCACAAACAATGGTCTTGGTCGACCACCCCAATGTCCTTAACTCACACTGCTCGTTCGTTAGTGACCACGAACTATGGGTGGTCATGCCATTTATGGCCGGTGGCTCGTGTTTCCACATTTTGAAATCTGCTTATCCTGATGGTTTTGAAGAAGTAGTCATTGCAACCATACTGAGGGAGGTACTGAAGGGTCTAGAGTATCTTCATCAGCATGGACACATACATCGAGATGTCAAAGCTGGAAATATTCTGATCGATGCAAGAGGTCAAATAAAGCTGGGGGATTTTGGTGTTGCTGCTTGCCTTTTTGATTCAGGGGACAGGCAGCGCGTGAGAAATACCTTTGTCGGAACACCTTGCTGGATGGCACCCGAAGTTATGGAGCAAATACGTGGTTATGACTTCAAGGCTGACATCTGGTCTTTTGGCATTACTGCACTAGAGCTTGCTCATGGCCATGCTCCTTTCTCAAAGTATCCTCCAATGAAGGTGCTGCTGATGACCCTGCAAAATGCGCCTCCTGGCCTTGATTATGAGAGAGATCGGAAATTTTCAAAGTCTTTTAAGCAGATGATTGCTAGTTGTTTGGTGAAAGATCCTTCGAAACGACCTTCTGCAAAGAAGTTATTGAAGCATTCTTTCTTCAAGCAAGCTCGTTCGAATGATTATATTGCACGTGTCCTTTTGGAAGGCCTGCCTGCTCTAGGTGATCGTATTGAGGCCTTAAAGAGAAAGGAAGAAGATATGCTCGCACAAAAGAAGATGCCTGATGTGCAGAAAGAAGAAATATCCCAGAACGAATACAAAAGAGGAATCAGCGGGTGGAACTTCAATCTTGATGATGTGAAAGCTCAGGCATCGTTGATACAAGATGTTAATGACCCCATAATCGAAAATAATCCAGAAGGGAGCTCAGATTCTTTGTGTGCACTTGATGTCCAAGAAAATCAAACCCATAATCTAAACTCTTCTCTGGCGACCGATGTGGTTGAGGATGATATGATGCAGAACCAATCTGTTCGGCTTCCACTAGTTGACCCGAAATCTAATGCTTTGGAAGTCGGAAATGACAAATCAGATTTAGATCATACCATTGGTAGATCATGCCATGAGCACAACCATGATCATCTAACCGACAACAATTTGATTGAGCCGCGTGGTGTGGAGAAAATTGAAAAGGGTTTTGAAAGGCCACCTAATGGTCTTCTTCATAGAAGAGCATTTTCAGCTTCACCTTATCCGACCATCCTAGAAGTTGCTCTGCCGCGTTATAAAGGAGACAGTGATGATTTGCAAAAGCAGCTTCCCAACATTCCAAATTATGACATTGCAACCGATTACCAGGCTTTGGATGATGTTGAAGTTTCTTCTAAGGCTAAGTCACCAGCAAACGGCGAAAGACTCGAGGAGAAGGAAAAGGTGCCGGTAGTTCAACAAAAAGGCCGTTTCAAAGTGACGTCCGAGAATGTTGACTTACAAAGGCCTCTGCCTAGTCCTGTGCTACAAAAGAGTCACAGCATGCAGGTGATTACTTCACATTCTCCTCCAATTCCTCTTCCATCAGTTCTACCGACACCTCAACCATCGCCTCTACATTCGCCTTCTAAAGTTGCATCATCTCATTCCGGCTCTGCTCTCTTTTCCGAATTGCTTTCTGCTTTGCAGTCAAACATTATTCAAAGGGAAAGTGTTTTGACTTTAATGAAGCATTGTACTGCTGCTGACTCAGCAGTGAACCGTGTTGTTGACGGAGGAGGTAAAGCAACCTTTCCATCACTATTGGAAAAATCTATGCTCGAATCGGCCCATGACAGAGAAAAAGAGTTGCTTTATGAAATCACCGAGCTGCAGAGGAGACTCATAATTGCCCAAGATGAACTTCAAAAACTTAAAACATAA 2076 43.88 MEKKKYPIGADHYALYEEVGHGVSASVRRALCRPFNEIVAIKILDFERDNIDLNNISREAQTMVLVDHPNVLNSHCSFVSDHELWVVMPFMAGGSCFHILKSAYPDGFEEVVIATILREVLKGLEYLHQHGHIHRDVKAGNILIDARGQIKLGDFGVAACLFDSGDRQRVRNTFVGTPCWMAPEVMEQIRGYDFKADIWSFGITALELAHGHAPFSKYPPMKVLLMTLQNAPPGLDYERDRKFSKSFKQMIASCLVKDPSKRPSAKKLLKHSFFKQARSNDYIARVLLEGLPALGDRIEALKRKEEDMLAQKKMPDVQKEEISQNEYKRGISGWNFNLDDVKAQASLIQDVNDPIIENNPEGSSDSLCALDVQENQTHNLNSSLATDVVEDDMMQNQSVRLPLVDPKSNALEVGNDKSDLDHTIGRSCHEHNHDHLTDNNLIEPRGVEKIEKGFERPPNGLLHRRAFSASPYPTILEVALPRYKGDSDDLQKQLPNIPNYDIATDYQALDDVEVSSKAKSPANGERLEEKEKVPVVQQKGRFKVTSENVDLQRPLPSPVLQKSHSMQVITSHSPPIPLPSVLPTPQPSPLHSPSKVASSHSGSALFSELLSALQSNIIQRESVLTLMKHCTAADSAVNRVVDGGGKATFPSLLEKSMLESAHDREKELLYEITELQRRLIIAQDELQKLKT 691
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 15014080 15019337 + Bma004636.1 Bma10g00841 89904

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g00841 691 Coils Coil 658 691 - -
Bma10g00841 691 SUPERFAMILY Protein kinase-like (PK-like) 11 590 IPR011009 -
Bma10g00841 691 Gene3D Transferase(Phosphotransferase) domain 1 94 328 - -
Bma10g00841 691 ProSitePatterns Protein kinases ATP-binding region signature. 19 42 IPR017441 GO:0005524
Bma10g00841 691 MobiDBLite consensus disorder prediction 514 539 - -
Bma10g00841 691 MobiDBLite consensus disorder prediction 576 590 - -
Bma10g00841 691 Pfam Protein kinase domain 14 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma10g00841 691 MobiDBLite consensus disorder prediction 568 596 - -
Bma10g00841 691 ProSiteProfiles Protein kinase domain profile. 13 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma10g00841 691 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 1 691 - -
Bma10g00841 691 CDD STKc_OSR1_SPAK 11 274 - -
Bma10g00841 691 MobiDBLite consensus disorder prediction 522 537 - -
Bma10g00841 691 Gene3D Phosphorylase Kinase; domain 1 1 90 - -
Bma10g00841 691 SMART serkin_6 13 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma10g00841 691 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 1 691 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g00841 K08835 OXSR1, STK39; serine/threonine-protein kinase OSR1/STK39 [EC:2.7.11.1] - jre:108985864 928.702
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00975 Bma-Chr1:9607098 Bma10g00841 Bma-Chr10:15014080 0 dispersed
Bma05g00683 Bma-Chr5:39699566 Bma10g00841 Bma-Chr10:15014080 8.37E-172 dispersed
Bma10g00841 Bma-Chr10:15014080 Bma14g00255 Bma-Chr14:3020751 5.67E-59 dispersed
Bma10g00841 Bma-Chr10:15014080 Bma12g00255 Bma-Chr12:3305310 6.06E-179 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma14g00255 . 1 577 MAP Kinase Kinase Kinase Kinase AT1G53165 64.2 2.8e-190 662.1
Bma01g00127 . 223 488 MAP Kinase Kinase Kinase Kinase AT1G53165 50.9 2.3e-67 253.8
Bma14g00255 . 1 577 MAP Kinase Kinase Kinase Kinase AT3G15220 67.3 3.1e-205 711.8
Bma01g00127 . 223 488 MAP Kinase Kinase Kinase Kinase AT3G15220 50.2 6.7e-67 252.3
Bma01g00127 . 9 792 MAP Kinase Kinase Kinase Kinase AT1G69220 55.8 2.2e-218 755.7
Bma01g00975 . 1 662 MAP Kinase Kinase Kinase Kinase AT5G14720 64.0 4.2e-239 824.3
Bma12g00255 . 5 693 MAP Kinase Kinase Kinase Kinase AT4G24100 65.1 4.4e-242 834.3
Bma05g00683 . 5 662 MAP Kinase Kinase Kinase Kinase AT4G24100 66.2 1.4e-237 819.3
Bma05g00683 . 6 662 MAP Kinase Kinase Kinase Kinase AT4G10730 67.2 1.5e-239 825.9
Bma12g00255 . 6 694 MAP Kinase Kinase Kinase Kinase AT4G10730 65.4 1.1e-237 819.7
Bma10g00841 . 4 402 MAP Kinase Kinase Kinase Kinase AT1G70430 56.9 9.2e-129 457.6
Bma12g00255 . 2 401 MAP Kinase Kinase Kinase Kinase AT1G70430 54.0 1.8e-121 433.3
Bma05g00683 . 2 350 MAP Kinase Kinase Kinase Kinase AT1G70430 60.2 4.6e-120 428.7
Bma10g00841 . 1 678 MAP Kinase Kinase Kinase Kinase AT1G79640 58.7 3.1e-210 728.4
Bma01g00975 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 57.1 5.5e-100 361.7
Bma10g00841 . 5 324 MAP Kinase Kinase Kinase Kinase AT1G23700 51.1 3.8e-85 312.4
Bma05g00683 . 14 303 MAP Kinase Kinase Kinase Kinase AT1G23700 52.2 9.2e-79 291.2
Bma12g00255 . 12 303 MAP Kinase Kinase Kinase Kinase AT1G23700 50.8 5.0e-77 285.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002203 1 4 3 2 3 1 2 1 1 2 1 1 3 2 2 3 2 5 2 1 2 2 2 2 1 1 2 4 2 2 62
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66748 PF00069 Pkinase 5.30E-60 CL0016 Bma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma10g00841 Bma_Chr10 FPKM 5.244074 5.636815 6.232321 6.556128 4.286576 4.221355 5.072807 6.174993 5.112119 5.9422