Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g00846 ATGTACGAGAATTACAATGCATTGAAAACCCAGTTGGTAGATTTCATGAGCAAAAACTCGGACAAGGACCTTAGCCCGTCGAAGAAAAGAAAATCAGAAAGCAGCGACAACAACATCATCGGCAATATTGTAGGAATTGACGCAAATTCCGACGCCAGCTCCAGCGACGAGGAATCGTGCAAGAAACCCAGAGAAGAAACAATCAAATCCAGAGTCACAAAAGCTTATTACAAGACTGAACCTTCTAATACGAGGCTGATTGTGAAAGATGGGTATCAATGGAGGAAATATGGGCAAAAAGTGACGAGGGATAATCCTTCCCCAAGAGCTTATTTCAAATGCTCTTTTGCTCCTAGCTGTCCAGTCAAAAAGAAGGTGCAAAGAAGTGTGGAAGATCAGTCCATTTTGGTGGCAACTTATGAAGGAGAACACAACCATCCAAGCTCTTCTCCAATGGAGGTGAACTCAACCTCAACACGACGTTCGGTCCCTCTTTCGAGCTCTCTCGGCTCATCAGGACCGTCCATCAATCTCGACCTCGTGAAATCGAAGACCATTAACGAAGCGAAAGCTTTGGAAGGCAGAACTGCTACGCCTGAAATGCAGCAGTTTCTGGTAGAGCAGATGGCTTCTTCTTTGACAAAAGATCCTAACTTCACAGCAGCATTGACGGCAGCCATATCTGGAAGAATGTTTTCGAGATAA 705 44.68 MYENYNALKTQLVDFMSKNSDKDLSPSKKRKSESSDNNIIGNIVGIDANSDASSSDEESCKKPREETIKSRVTKAYYKTEPSNTRLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSVEDQSILVATYEGEHNHPSSSPMEVNSTSTRRSVPLSSSLGSSGPSINLDLVKSKTINEAKALEGRTATPEMQQFLVEQMASSLTKDPNFTAALTAAISGRMFSR 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 15059408 15060291 - Bma004641.1 Bma10g00846 89909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g00846 234 Pfam WRKY DNA -binding domain 89 147 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma10g00846 234 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 1 233 IPR044810 GO:0003700
Bma10g00846 234 MobiDBLite consensus disorder prediction 141 170 - -
Bma10g00846 234 MobiDBLite consensus disorder prediction 21 35 - -
Bma10g00846 234 Gene3D WRKY domain 72 149 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bma10g00846 234 MobiDBLite consensus disorder prediction 36 53 - -
Bma10g00846 234 ProSiteProfiles WRKY domain profile. 83 149 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma10g00846 234 MobiDBLite consensus disorder prediction 143 170 - -
Bma10g00846 234 SMART WRKY_cls 88 148 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma10g00846 234 SUPERFAMILY WRKY DNA-binding domain 85 148 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bma10g00846 234 MobiDBLite consensus disorder prediction 17 66 - -
Bma10g00846 234 PANTHER WRKY TRANSCRIPTION FACTOR 40-RELATED 1 233 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma10g00846 Bma-Chr10:15059408 Bma12g00386 Bma-Chr12:7655896 4.03E-26 dispersed
Bma10g00846 Bma-Chr10:15059408 Bma10g00854 Bma-Chr10:15358132 5.57E-170 proximal
Bma10g00846 Bma-Chr10:15059408 Bma13g00668 Bma-Chr13:16791555 1.10E-121 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57956 PF03106 WRKY 1.30E-23 CL0274 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g00846 - - rcu:8279744 313.538