Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g00909 ATGTGTGGTGGTTCTGAAACACTAAAATCAGCATCTACTGATACCTCGTCTGCTGCGCAAATCACTGCTGCTAAGCCGAAAGACATGAGGTGCTTGATAACTGGAACTGAATTTTCTTTGTACGACTTGTTGGAATTTGCTTCTGATAATAACGTTGAAGGATTTAAACGATTGATAGATTGTGATGCGTCTTCCATTAATGAGTCTGGACTGTGGTATGTCCGTCATAGTGGCTCAAAGCAGGTTGTTCAAGAGGATAGAACCCCACTAATGGTTGCTGCTACCAATGGTAGTGTTAATGTCCTGAAACTTTTGCTTTCGTTTCCTGAGATTGATGTAAATCTCTCATCTGGATTGGATAAAAGCACTGCCCTTCATTGTGCTGCTTCTGGTGGATCTGTCAGCATTTTTGAGGCTGTTAATATTCTTTTATCTGCGGGTGCGGATCCAAATTCGGTTGATGCAAATGGTTATCGTCCTGTAGATGTCATTTATGTACATCCAAAGCTGCATAACATGAAGGTCAAGCTTGAGGAACTATTAAGAAGTAGTGATTGTCATCCTGATGAATTGACCTCCTTGCAATTATCCTTCATTACCTCATGTTCTTTATCACCTGCGCTCACTTCAGATACAGAGAAGGAATTTTTATCTTTGAAGTCAACATCTTCTCTTGTTAGGAAAAGTACTGATGAGTCTGTTAATTCTACAGTGGAGCAGAAAGAATATCTAATTGATCCTTCTCTTCCTGACATCAAAAATAGTATTTATGCAACTGATGAGTTTCGCATGTTTTCCTTCAAGGTGAGACCTTGTTCACGAGCATATTCACATGATTGGACTGATTGTCCTTTTGTTCACCCTGGGGAGAATGCTCGCAGAAGGGATCCAAGAAAGTTTCACTACAGTTGTGTACCTTGTCCAGATTTTCGAAAGGGTGCTTGTAGGCGTGGAGACATGTGTGAATATGCACATGGGGTGTTTGAGTGCTGGCTCCATCCTGCTCAGTATCGAACACGCCTATGCAAGGATGGGGCAAGTTGTGATAGACGGGTTTGTTTTTTTGCCCATGCAACTTTGGAGCTCAGGCCCTTGTATGTTTCTACTGGTTCTGCTGTTCCTTCGCCACGGTTGTCAACATCAGCACCTAATGTTATGGACATGGCTGCCGCATTAAGTCTCTTTCCTAGATCTCCTTCATCATTATCAGTCATGTCTCCATTTTCTCAGCCAATGTCTCCATTTTCTCAGCCAATGTCTCCTTCTCCATTTTCTCAGTCAATGTCTCCAGCCTCAACAGCCTGGGAGCAGCCAAATGTACCCACTCTTGATCTTCCTGGAAGCAGCTTACAATCCAGTCGCTTGAGAACTTCTCTTAGTGCCAGAGACATGTCACTGGAAGATTTAAATTGGTTGATGAATCATGACTCACAGAAACAGCTTGTGAGTGACGAGAATTTTTTCTCGCAGCTCCGCCCTAGTTCTGTCTGTCTTAGCCGCTCTGGCAGACCTAAAGCTCTAACTCCTTCCAATCTGGAAGAGCTTTTCTTTTCTGAGATATCTTCATCACCTCGATTTTCTGATCCTGGAGCAGTCTCTGTGTTTTCTCCAACTTACAAATCATCTGTTTTGTCACAATTCCAACAACAGCAGAGCATGTTGTCACACATTAATACTAGTCTTCTGTCTCCTAAAACTGTTGAACTCCCATTGCAGCATGCTTCTTTGGGAGCCTTGTCTCCTGGACGGATGTTGCCAAGCAATGCTGATCCGATATCTCCTATGGGCTCTAGACTTTCTCCATTTGCTCATGGCGAGAAGCATCAAAATCTGCATTGCTTGAGCTCTAGGGACCTTGGTTCCAACATTCCTGTCTCAAATGGATCCCCAGTAAGGTCTTGGTCGAAATGGGGTTCTTCTATGGGAAAAGTGGATTGGTCAGTTCATGGTGATGAACTGGCTTGTTTGAGAGGATCATCGTTACTTGAGCTTGGAGGAGCCTGA 2004 43.41 MCGGSETLKSASTDTSSAAQITAAKPKDMRCLITGTEFSLYDLLEFASDNNVEGFKRLIDCDASSINESGLWYVRHSGSKQVVQEDRTPLMVAATNGSVNVLKLLLSFPEIDVNLSSGLDKSTALHCAASGGSVSIFEAVNILLSAGADPNSVDANGYRPVDVIYVHPKLHNMKVKLEELLRSSDCHPDELTSLQLSFITSCSLSPALTSDTEKEFLSLKSTSSLVRKSTDESVNSTVEQKEYLIDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTDCPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGASCDRRVCFFAHATLELRPLYVSTGSAVPSPRLSTSAPNVMDMAAALSLFPRSPSSLSVMSPFSQPMSPFSQPMSPSPFSQSMSPASTAWEQPNVPTLDLPGSSLQSSRLRTSLSARDMSLEDLNWLMNHDSQKQLVSDENFFSQLRPSSVCLSRSGRPKALTPSNLEELFFSEISSSPRFSDPGAVSVFSPTYKSSVLSQFQQQQSMLSHINTSLLSPKTVELPLQHASLGALSPGRMLPSNADPISPMGSRLSPFAHGEKHQNLHCLSSRDLGSNIPVSNGSPVRSWSKWGSSMGKVDWSVHGDELACLRGSSLLELGGA 667
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 17659737 17661740 - Bma004725.1 Bma10g00909 89972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g00909 667 SMART c3hfinal6 301 327 IPR000571 GO:0046872
Bma10g00909 667 SMART c3hfinal6 336 359 IPR000571 GO:0046872
Bma10g00909 667 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 56 24 664 - -
Bma10g00909 667 ProSiteProfiles Zinc finger C3H1-type profile. 306 328 IPR000571 GO:0046872
Bma10g00909 667 ProSiteProfiles Ankyrin repeat profile. 85 107 IPR002110 GO:0005515
Bma10g00909 667 Pfam Ankyrin repeats (3 copies) 47 154 IPR002110 GO:0005515
Bma10g00909 667 Gene3D - 302 364 - -
Bma10g00909 667 Gene3D - 40 182 IPR036770 -
Bma10g00909 667 ProSiteProfiles Ankyrin repeat region circular profile. 85 107 - -
Bma10g00909 667 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 306 326 IPR000571 GO:0046872
Bma10g00909 667 PANTHER UNKEMPT FAMILY MEMBER 24 664 IPR045234 -
Bma10g00909 667 SMART ANK_2a 120 152 IPR002110 GO:0005515
Bma10g00909 667 SMART ANK_2a 85 115 IPR002110 GO:0005515
Bma10g00909 667 ProSiteProfiles Ankyrin repeat profile. 120 155 IPR002110 GO:0005515
Bma10g00909 667 ProSiteProfiles Ankyrin repeat region circular profile. 120 154 - -
Bma10g00909 667 SUPERFAMILY Ankyrin repeat 43 167 IPR036770 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma10g00909 Bma-Chr10:17659737 Bma01g00217 Bma-Chr1:1937404 9.75E-56 dispersed
Bma10g01131 Bma-Chr10:37387197 Bma10g00909 Bma-Chr10:17659737 0 transposed
Bma10g00909 Bma-Chr10:17659737 Bma13g00133 Bma-Chr13:1338580 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57959 PF12796 Ank_2 7.30E-11 CL0465 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g00909 - - csv:101205376 781.171