Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma10g00922 | ATGGCAGCCGTCGCCACAGCAAGCGTTGTCCCAGCCAATAGGCGCCGTCCCCCCGCCGCTGCTGAAGATAAGGTGGAGTTCGAGACAACGGAGGGGGTCGAGCCGATTATGAGTTTTGATCAGATGGGTATTAAGGACGATCTGCTTCGTGGGATATACGCTTATGGCTTTGAGAAACCCTCCGCCATCCAACAGAGAGCCGTCAGGCCAATCATTGAGGGTCGGGATGTAATAGCACAGGCTCAATCTGGTACTGGCAAGACCTCCATGATTGCTCTCACCGTTTGCCAAATCGTGGATACATCAAGTAGAGAGGTACAAGCCTTAATATTGTCTCCTACAAGGGAATTGGCCACTCAGACGGAAAAAGTCATATTGACCGTTGGCGATTTCATAAATATACAAGTGCATTCGTGTATTGGAGGGAAAAGTGTGGGCGAAGATATCAGAAAGCTAGAATATGGTGTTCATGTGGTTTCTGGAACTCCTGGAAGAGTTTGTGATATGATCAAGAGGAGAACACTGCGTACTAGAAACATTAAATTACTAGTCCTTGATGAATCTGATGAGATGTTGAGCAGAGGGTTCAAGGACCAAATTTATGACGTGTACAGATATCTACCGCCAGAGCTTCAGGTTGTTTTGATTTCTGCCACTCTTCCTCATGAAATTTTGGAGATTACGAACAAGTTTATGACAGATCCTGTGAGGATACTTGTTAAACGTGATGAGTTAACTTTGGAGGGTATTAAGCAGTTTTTCGTCGCAGTTGAAAGGGAAGAGTGGAAATTTGATACTCTATGTGATCTATATGATACTCTAACCATTACGCAGGCTGTTATTTTTTGCAATACGAAGAGAAAGGTGGAATGGTTGACAGAAAAGATGCGCAGTAATAACTTCACTGTTTCTCAAATGCATGGGGACATGCCTCAAAAGGAAAGAGATGCTATTATGGGGGATTTCCGATCTGGTACAACTCGTGTTCTCATAACAACAGATGTTTGGGCTCGAGGGATTGATGTTCAGCAGGTTTCGTTGGTTATCAACTACGACCTTCCAAATAATCGAGAGCTTTATATTCACCGAATTGGTCGGTCTGGCCGTTTTGGACGAAAGGGTGTTGCAATAAACTTTGTGAAGAGTGATGACATCAAGATTCTGAGGGACATTGAGCAATATTACAGTACCCAGATAGATGAAATGCCAATGAATGTTGCTGATTTGATATAA | 1233 | 43.63 | MAAVATASVVPANRRRPPAAAEDKVEFETTEGVEPIMSFDQMGIKDDLLRGIYAYGFEKPSAIQQRAVRPIIEGRDVIAQAQSGTGKTSMIALTVCQIVDTSSREVQALILSPTRELATQTEKVILTVGDFINIQVHSCIGGKSVGEDIRKLEYGVHVVSGTPGRVCDMIKRRTLRTRNIKLLVLDESDEMLSRGFKDQIYDVYRYLPPELQVVLISATLPHEILEITNKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVEWLTEKMRSNNFTVSQMHGDMPQKERDAIMGDFRSGTTRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI | 410 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 18648748 | 18653249 | - | Bma004750.1 | Bma10g00922 | 89985 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma10g00922 | 410 | Gene3D | - | 242 | 410 | IPR027417 | - | |
Bma10g00922 | 410 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 68 | 238 | IPR014001 | - | |
Bma10g00922 | 410 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 249 | 410 | IPR001650 | - | |
Bma10g00922 | 410 | SMART | helicmild6 | 290 | 371 | IPR001650 | - | |
Bma10g00922 | 410 | CDD | SF2_C_DEAD | 250 | 380 | - | - | |
Bma10g00922 | 410 | CDD | DEADc_EIF4AIII_DDX48 | 39 | 239 | - | - | |
Bma10g00922 | 410 | Pfam | Helicase conserved C-terminal domain | 263 | 371 | IPR001650 | - | |
Bma10g00922 | 410 | SMART | ultradead3 | 56 | 253 | IPR014001 | - | |
Bma10g00922 | 410 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 37 | 65 | IPR014014 | GO:0003724 | |
Bma10g00922 | 410 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 105 | 393 | IPR027417 | - | |
Bma10g00922 | 410 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 21 | 403 | - | - | |
Bma10g00922 | 410 | PANTHER | BNAA01G25900D PROTEIN | 21 | 403 | - | - | |
Bma10g00922 | 410 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Bma10g00922 | 410 | Gene3D | - | 21 | 241 | IPR027417 | - | |
Bma10g00922 | 410 | Pfam | DEAD/DEAH box helicase | 62 | 224 | IPR011545 | GO:0003676|GO:0005524 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma02g01063 | Bma-Chr2:52225895 | Bma10g00922 | Bma-Chr10:18648748 | 9.22E-96 | dispersed | |
Bma06g01187 | Bma-Chr6:48947135 | Bma10g00922 | Bma-Chr10:18648748 | 9.07E-94 | dispersed | |
Bma09g00970 | Bma-Chr9:49221058 | Bma10g00922 | Bma-Chr10:18648748 | 3.18E-95 | dispersed | |
Bma10g00062 | Bma-Chr10:597551 | Bma10g00922 | Bma-Chr10:18648748 | 2.49E-62 | dispersed | |
Bma10g00922 | Bma-Chr10:18648748 | Bma15g00330 | Bma-Chr15:3207888 | 0 | dispersed | |
Bma10g00922 | Bma-Chr10:18648748 | Bma10g00926 | Bma-Chr10:18847966 | 0 | proximal |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma10g00922 | K13025 | - | csv:101222664 | 759.985 |