Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g00922 ATGGCAGCCGTCGCCACAGCAAGCGTTGTCCCAGCCAATAGGCGCCGTCCCCCCGCCGCTGCTGAAGATAAGGTGGAGTTCGAGACAACGGAGGGGGTCGAGCCGATTATGAGTTTTGATCAGATGGGTATTAAGGACGATCTGCTTCGTGGGATATACGCTTATGGCTTTGAGAAACCCTCCGCCATCCAACAGAGAGCCGTCAGGCCAATCATTGAGGGTCGGGATGTAATAGCACAGGCTCAATCTGGTACTGGCAAGACCTCCATGATTGCTCTCACCGTTTGCCAAATCGTGGATACATCAAGTAGAGAGGTACAAGCCTTAATATTGTCTCCTACAAGGGAATTGGCCACTCAGACGGAAAAAGTCATATTGACCGTTGGCGATTTCATAAATATACAAGTGCATTCGTGTATTGGAGGGAAAAGTGTGGGCGAAGATATCAGAAAGCTAGAATATGGTGTTCATGTGGTTTCTGGAACTCCTGGAAGAGTTTGTGATATGATCAAGAGGAGAACACTGCGTACTAGAAACATTAAATTACTAGTCCTTGATGAATCTGATGAGATGTTGAGCAGAGGGTTCAAGGACCAAATTTATGACGTGTACAGATATCTACCGCCAGAGCTTCAGGTTGTTTTGATTTCTGCCACTCTTCCTCATGAAATTTTGGAGATTACGAACAAGTTTATGACAGATCCTGTGAGGATACTTGTTAAACGTGATGAGTTAACTTTGGAGGGTATTAAGCAGTTTTTCGTCGCAGTTGAAAGGGAAGAGTGGAAATTTGATACTCTATGTGATCTATATGATACTCTAACCATTACGCAGGCTGTTATTTTTTGCAATACGAAGAGAAAGGTGGAATGGTTGACAGAAAAGATGCGCAGTAATAACTTCACTGTTTCTCAAATGCATGGGGACATGCCTCAAAAGGAAAGAGATGCTATTATGGGGGATTTCCGATCTGGTACAACTCGTGTTCTCATAACAACAGATGTTTGGGCTCGAGGGATTGATGTTCAGCAGGTTTCGTTGGTTATCAACTACGACCTTCCAAATAATCGAGAGCTTTATATTCACCGAATTGGTCGGTCTGGCCGTTTTGGACGAAAGGGTGTTGCAATAAACTTTGTGAAGAGTGATGACATCAAGATTCTGAGGGACATTGAGCAATATTACAGTACCCAGATAGATGAAATGCCAATGAATGTTGCTGATTTGATATAA 1233 43.63 MAAVATASVVPANRRRPPAAAEDKVEFETTEGVEPIMSFDQMGIKDDLLRGIYAYGFEKPSAIQQRAVRPIIEGRDVIAQAQSGTGKTSMIALTVCQIVDTSSREVQALILSPTRELATQTEKVILTVGDFINIQVHSCIGGKSVGEDIRKLEYGVHVVSGTPGRVCDMIKRRTLRTRNIKLLVLDESDEMLSRGFKDQIYDVYRYLPPELQVVLISATLPHEILEITNKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVEWLTEKMRSNNFTVSQMHGDMPQKERDAIMGDFRSGTTRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 18648748 18653249 - Bma004750.1 Bma10g00922 89985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g00922 410 Gene3D - 242 410 IPR027417 -
Bma10g00922 410 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 68 238 IPR014001 -
Bma10g00922 410 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 249 410 IPR001650 -
Bma10g00922 410 SMART helicmild6 290 371 IPR001650 -
Bma10g00922 410 CDD SF2_C_DEAD 250 380 - -
Bma10g00922 410 CDD DEADc_EIF4AIII_DDX48 39 239 - -
Bma10g00922 410 Pfam Helicase conserved C-terminal domain 263 371 IPR001650 -
Bma10g00922 410 SMART ultradead3 56 253 IPR014001 -
Bma10g00922 410 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 37 65 IPR014014 GO:0003724
Bma10g00922 410 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 105 393 IPR027417 -
Bma10g00922 410 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 21 403 - -
Bma10g00922 410 PANTHER BNAA01G25900D PROTEIN 21 403 - -
Bma10g00922 410 MobiDBLite consensus disorder prediction 1 21 - -
Bma10g00922 410 Gene3D - 21 241 IPR027417 -
Bma10g00922 410 Pfam DEAD/DEAH box helicase 62 224 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g01063 Bma-Chr2:52225895 Bma10g00922 Bma-Chr10:18648748 9.22E-96 dispersed
Bma06g01187 Bma-Chr6:48947135 Bma10g00922 Bma-Chr10:18648748 9.07E-94 dispersed
Bma09g00970 Bma-Chr9:49221058 Bma10g00922 Bma-Chr10:18648748 3.18E-95 dispersed
Bma10g00062 Bma-Chr10:597551 Bma10g00922 Bma-Chr10:18648748 2.49E-62 dispersed
Bma10g00922 Bma-Chr10:18648748 Bma15g00330 Bma-Chr15:3207888 0 dispersed
Bma10g00922 Bma-Chr10:18648748 Bma10g00926 Bma-Chr10:18847966 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g00922 K13025 - csv:101222664 759.985