Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g00926 ATGGCAGCCGTCGCCTCAGCAAGCGTTATCCCAGCCAATAGGCGGCGTCCCCCCGCCGCGGCTGAAGATAAGGTGGAGTTCGAGACAACGGAGGGGGTCGAGCCGATTATGAGTTTTGATCAGATGGGTATCAAGGACGATCTGCTTCGTGGGATATACGCTTATGGCTTTGAGAAACCCTCCGCCATCCAACAGAGAGCCGTCAGGCCAATCATTGAGGGTCGGGATGTAATAGCACAGGCTCAATCTGGTACTGGCAAGACCTCCATGATTGCTCTCACCGTTTGCCAAATCGTGGATACATCAAGTAGAGAGGTACAAGCCTTAATATTGTCTCCTACAAGGGAATTGGCCACTCAGACGGAAAAAGTCATATTGACCGTTGGCGATTTCATAAATATACAAGTGCATTCATGTATTGGAGGGAAAAGTGTGGGCGAAGATATCAGAAAGCTAGAATATGGTGTTCATGTGGTTTCTGGAACTCCTGGAAGAGTTTGTGATATGATCAAGAGGAGAACACTGCGTACTAGAAACATTAAATTACTCGTCCTTGATGAATCTGATGAGATGTTGAGCAGAGGGTTCAAGGACCAAATTTATGACGTGTACAGATATCTACCGCCAGAGCTTCAGGTTGTTTTGATTTCTGCCACTCTTCCTCATGAAATTTTGGAGATTACGAACAAGTTTATGACAGATCCTGTGAGGATACTTGTTAAACGTGATGAGTTAACTTTGGAGGGTATTAAGCAGTTTTTCGTCGCAGTTGAAAGGGAAGAGTGGAAATTTGATACTCTATGTGATCTATATGATACTCTAACCATTACACAGGCTGTTATTTTTTGCAATACGAAGAGAAAGGTGGAATGGTTGACAGAAAAGATGCGCAGTAATAACTTCACTGTTTCTCAAATGCATGGGGACATGCCTCAAAAGGAAAGAGATGCTATTATGGGGGATTTCCGATCTGGTACAACTCGTGTTCTCATAACAACAGATGTTTGGGCTCGAGGGATTGATGTTCAGCAGGTTTCGTTGGTTATCAACTATGACCTTCCAAATAATCGAGAGCTTTATATTCACCGAATTGGTCGGTCTGGCCGTTTTGGACGAAAGGGTGTTGCAATAAACTTTGTGAAGAGTGATGACATCAAGATTCTGAGGGACATTGAGCAATATTACAGTACCCAGATAGATGAAATGCCAATGAATGTTGCTGATTTGATATAA 1233 43.55 MAAVASASVIPANRRRPPAAAEDKVEFETTEGVEPIMSFDQMGIKDDLLRGIYAYGFEKPSAIQQRAVRPIIEGRDVIAQAQSGTGKTSMIALTVCQIVDTSSREVQALILSPTRELATQTEKVILTVGDFINIQVHSCIGGKSVGEDIRKLEYGVHVVSGTPGRVCDMIKRRTLRTRNIKLLVLDESDEMLSRGFKDQIYDVYRYLPPELQVVLISATLPHEILEITNKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVEWLTEKMRSNNFTVSQMHGDMPQKERDAIMGDFRSGTTRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 18847966 18852011 + Bma004756.1 Bma10g00926 89989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g00926 410 Gene3D - 242 410 IPR027417 -
Bma10g00926 410 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 68 238 IPR014001 -
Bma10g00926 410 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 21 403 - -
Bma10g00926 410 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 249 410 IPR001650 -
Bma10g00926 410 PANTHER BNAA01G25900D PROTEIN 21 403 - -
Bma10g00926 410 SMART helicmild6 290 371 IPR001650 -
Bma10g00926 410 CDD SF2_C_DEAD 250 380 - -
Bma10g00926 410 CDD DEADc_EIF4AIII_DDX48 39 239 - -
Bma10g00926 410 MobiDBLite consensus disorder prediction 1 23 - -
Bma10g00926 410 Pfam Helicase conserved C-terminal domain 263 371 IPR001650 -
Bma10g00926 410 SMART ultradead3 56 253 IPR014001 -
Bma10g00926 410 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 37 65 IPR014014 GO:0003724
Bma10g00926 410 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 105 393 IPR027417 -
Bma10g00926 410 Gene3D - 21 241 IPR027417 -
Bma10g00926 410 Pfam DEAD/DEAH box helicase 62 224 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma10g00926 Bma-Chr10:18847966 Bma15g00330 Bma-Chr15:3207888 0 dispersed
Bma10g00922 Bma-Chr10:18648748 Bma10g00926 Bma-Chr10:18847966 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g00926 K13025 - csv:101222664 758.444