Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g00932 ATGAATTCGGTAGAATTAAGAACCGTGGGAAATAGGAGTTTAGAATGGGATTTGAATGACTGGAAGTGGGATGGGGATCTTTTCCTTGCAAGCTCTTTGAATTCAGTGCCATCCGGTACCTTTAGGCGACAAATCTTTTCGAATGGAACAATTCCAGTGACTGGAGGTTTGTCAAACAGTTCCTCATCGTGCTCAGATGATGTTACTATGGGGATTGAAAAAAGGAAGAACGAAATTGAAAAAAGGAGGAGAATTACTGGGATGGAAGATAGAGCCTTGAATGATGAATCGGGTGGGCCTATTCTAAAGCTTGATTCGCACGGTTATCATATTCCTGAGAGGGAAGTAGGGAGTTGGGAGGGTAGTAGTGGCAAGAAGACTAAGCTTGTTGGAGGAAGTTCAAACCGTGCGATTTGCCAGGTGGAGGACTGTGGAGCTGATCTGAGCAGGGCCAAGGATTATCACAGACGACATAAAGTCTGTGAGATGCATTCCAAAGCCAGTAGGGCGCTGGTAGGGAACCTCATGCAGCGATTTTGCCAGCAATGTAGCAGGTTTCATGCACTTCAAGAGTTTGACGAAGGAAAAAGAAGTTGTCGTAGGCGTTTGGCCGGCCATAACAAGCGAAGAAGAAAAACAAATCCCGAGTCAGCTGCGAATGGAAGCTCCTCAAATGAAGATCAAACAAGTGGCTATCTCCTTATGAGCTTGTTGAGAATACTTTCCAACATGCATTACCACTCTGCCGATCAGGATCTGATAAGCCGCACAGATCGTATTGTTATTAAATTATTTGGAAAAGATCCCAGTGATTTCCCTCTTGACTTACGAGCACAGGTTCTTGACTGGTTGGCACATAGTCCTACAGACATGGAGAGCTACATTAAGCCTGGTTGTGTGGTTCTTACCATCTATCTACGTCAGACAGAGGATGCTTGGGAGGAACTTTGCTATGACATATGTTGTAGCTTGAACAGGCTCCTCCAAGGCTCAGATGATACTTTCTGGAGAACGGGATGGGTTTATGCCAGAATTCAGCATCATCTAGCATTTGCTTTTCATGGTCAAGTTATGGTGGATACGTCGTTATCTCTCAGAAGCTCCCATTATTGTAATATTGTCAGTGTAAAACCTATTGCCGTATCTGCTTCAGAAAGGATTCAGTTTTCAGTTAGAGGCTCGAACTTGAAGCGGCCTGGAACAAGGTTACTCTGTGCACTTGAAGGGAAGTATCTGACTGAGAAGGCAACTCAAGAATCACCTGACACTGATTCAGTGAAGGAGCATGATGATCATAATGAGCTGGAGTTCATCAGCTTTTCTTGTTCTATTCCGGTAGTAAATGGAAGGGGCTTCATTGAGGTTGAAGATCATGGATTCAGCAGCAGCTTCTTTCCATTTATAGTTGCGGAGGATGATGTATGTTCAGATATTTGTGTTCTTGAGGCTACTATGGAGTTGACTGATACGAGCTCAGATGCAACGGGAGTAACAGTGACGGAAGCAAGGAGGCAAGCCTTGGATTTTATTCATGAAATGGGGTGGCTTCTTCATAAGAAACAATTGAACTCTAGAATGAAGATTATGAATCCAGATGTAGATACTTACCCTTTGGATCGGTTCAAGTGGCTTATGGATTTCTCGATGAACCATGATTGGTGTGCTGTAGTGAGGACATTATTAAATATTCTGTTTGATGGAATTGTGAGTATTGGAGATCACCCCTCTCTGAATGAGGCCTTATTCGAGATGAGTCTTCTACACCGGGCTGTAAGGAGAAGCAGTAAGTCGCTTGTGGAGCTCCTTTTGAGATTCAAGCCCCAAAAAGTGACGACAGAAAACGAAGTGGTTGATGGATTTTTGTTTAGGCCTGATGCTGCAGGACCTGCCGGCTTGACCCCACTTCACATCGCAGCTGCTAAAGATGGGTCTGAGGATGTGCTTGATGCATTAACCGACGACCCTGGAATGGTTGGAATTGAAGCATGGAGGAATGCTCGTGACAGCACGGGGTCCACACCTGAAGCCTACGCTCGCTTACGTGGCCATTTTTCGTACATCCACCTCATCCAGAGGAAAATCAACAAGAGAGCTTCCTCTGGGCATGTGGTTCTCGATATTCCTAGTGTTGTTCCCTCGGATCATAGCACAAATGATAAGCAAACGGACAACTTGGGCAGCGCCTTTGAGATCAGACTGACCCAGCCGAGACCGAACTGCAGAGTCTGTGATAAGAAACTCAGATATGGAAAATTGAGACCATCACTGGTTTACCGGCCTGCAATGTTGTCGATGGTGGCTATTGCAGCCGTCTGTGTGTGTGTGGCACTTCTGTTCAAAAGCTCGCCGGAAGTCCTTTATGTATTCCGTCCGTTCAGGTGGGAGTTGTTAGATTATGGAACGTATTGA 2409 45.21 MNSVELRTVGNRSLEWDLNDWKWDGDLFLASSLNSVPSGTFRRQIFSNGTIPVTGGLSNSSSSCSDDVTMGIEKRKNEIEKRRRITGMEDRALNDESGGPILKLDSHGYHIPEREVGSWEGSSGKKTKLVGGSSNRAICQVEDCGADLSRAKDYHRRHKVCEMHSKASRALVGNLMQRFCQQCSRFHALQEFDEGKRSCRRRLAGHNKRRRKTNPESAANGSSSNEDQTSGYLLMSLLRILSNMHYHSADQDLISRTDRIVIKLFGKDPSDFPLDLRAQVLDWLAHSPTDMESYIKPGCVVLTIYLRQTEDAWEELCYDICCSLNRLLQGSDDTFWRTGWVYARIQHHLAFAFHGQVMVDTSLSLRSSHYCNIVSVKPIAVSASERIQFSVRGSNLKRPGTRLLCALEGKYLTEKATQESPDTDSVKEHDDHNELEFISFSCSIPVVNGRGFIEVEDHGFSSSFFPFIVAEDDVCSDICVLEATMELTDTSSDATGVTVTEARRQALDFIHEMGWLLHKKQLNSRMKIMNPDVDTYPLDRFKWLMDFSMNHDWCAVVRTLLNILFDGIVSIGDHPSLNEALFEMSLLHRAVRRSSKSLVELLLRFKPQKVTTENEVVDGFLFRPDAAGPAGLTPLHIAAAKDGSEDVLDALTDDPGMVGIEAWRNARDSTGSTPEAYARLRGHFSYIHLIQRKINKRASSGHVVLDIPSVVPSDHSTNDKQTDNLGSAFEIRLTQPRPNCRVCDKKLRYGKLRPSLVYRPAMLSMVAIAAVCVCVALLFKSSPEVLYVFRPFRWELLDYGTY 802
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 19270616 19275728 + Bma004769.1 Bma10g00932 89995

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g00932 802 Gene3D - 563 703 IPR036770 -
Bma10g00932 802 Gene3D - 130 200 IPR036893 GO:0003677|GO:0005634
Bma10g00932 802 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 1-RELATED 248 801 - -
Bma10g00932 802 SUPERFAMILY SBT domain 137 218 IPR036893 GO:0003677|GO:0005634
Bma10g00932 802 ProSiteProfiles Zinc finger SBP-type profile. 136 213 IPR004333 GO:0003677
Bma10g00932 802 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 248 801 IPR044817 GO:0003677
Bma10g00932 802 SUPERFAMILY Ankyrin repeat 582 690 IPR036770 -
Bma10g00932 802 MobiDBLite consensus disorder prediction 202 227 - -
Bma10g00932 802 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 8 255 IPR044817 GO:0003677
Bma10g00932 802 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 1-RELATED 8 255 - -
Bma10g00932 802 Pfam SBP domain 139 212 IPR004333 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g00932 - - - jre:108999895 752.666
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00265 Bma-Chr8:3530611 Bma10g00932 Bma-Chr10:19270616 2.73E-34 dispersed
Bma10g00932 Bma-Chr10:19270616 Bma13g00158 Bma-Chr13:1799600 3.51E-130 dispersed
Bma02g01384 Bma-Chr2:56151178 Bma10g00932 Bma-Chr10:19270616 7.92E-29 transposed
Bma10g00932 Bma-Chr10:19270616 Bma13g00108 Bma-Chr13:1098280 7.33E-130 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma13g00158 . 163 953 SBP-box Gene Family AT2G47070 59.6 8.8e-254 873.2
Bma13g00108 . 163 982 SBP-box Gene Family AT2G47070 58.2 5.7e-253 870.5
Bma10g00932 . 163 801 SBP-box Gene Family AT2G47070 50.6 2.3e-209 725.7
Bma13g00108 . 3 982 SBP-box Gene Family AT3G60030 55.3 1.0e-280 963.0
Bma13g00158 . 3 953 SBP-box Gene Family AT3G60030 55.5 7.4e-279 956.8
Bma13g00158 . 163 953 SBP-box Gene Family AT2G47070 59.6 8.8e-254 873.2
Bma13g00108 . 163 982 SBP-box Gene Family AT2G47070 58.2 5.7e-253 870.5
Bma10g00932 . 163 801 SBP-box Gene Family AT2G47070 50.6 2.3e-209 725.7
Bma13g00108 . 3 982 SBP-box Gene Family AT3G60030 55.3 1.0e-280 963.0
Bma13g00158 . 3 953 SBP-box Gene Family AT3G60030 55.5 7.4e-279 956.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003053 3 3 4 4 3 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 0 1 2 1 2 2 2 52
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57960 PF03110 SBP 2.80E-29 No_clan Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma10g00932 Bma_Chr10 FPKM 2.961058 2.775251 6.678219 4.742908 4.619646 5.925752 5.103373 4.34605 4.484945 4.440457