Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g00932 ATGAATTCGGTAGAATTAAGAACCGTGGGAAATAGGAGTTTAGAATGGGATTTGAATGACTGGAAGTGGGATGGGGATCTTTTCCTTGCAAGCTCTTTGAATTCAGTGCCATCCGGTACCTTTAGGCGACAAATCTTTTCGAATGGAACAATTCCAGTGACTGGAGGTTTGTCAAACAGTTCCTCATCGTGCTCAGATGATGTTACTATGGGGATTGAAAAAAGGAAGAACGAAATTGAAAAAAGGAGGAGAATTACTGGGATGGAAGATAGAGCCTTGAATGATGAATCGGGTGGGCCTATTCTAAAGCTTGATTCGCACGGTTATCATATTCCTGAGAGGGAAGTAGGGAGTTGGGAGGGTAGTAGTGGCAAGAAGACTAAGCTTGTTGGAGGAAGTTCAAACCGTGCGATTTGCCAGGTGGAGGACTGTGGAGCTGATCTGAGCAGGGCCAAGGATTATCACAGACGACATAAAGTCTGTGAGATGCATTCCAAAGCCAGTAGGGCGCTGGTAGGGAACCTCATGCAGCGATTTTGCCAGCAATGTAGCAGGTTTCATGCACTTCAAGAGTTTGACGAAGGAAAAAGAAGTTGTCGTAGGCGTTTGGCCGGCCATAACAAGCGAAGAAGAAAAACAAATCCCGAGTCAGCTGCGAATGGAAGCTCCTCAAATGAAGATCAAACAAGTGGCTATCTCCTTATGAGCTTGTTGAGAATACTTTCCAACATGCATTACCACTCTGCCGATCAGGATCTGATAAGCCGCACAGATCGTATTGTTATTAAATTATTTGGAAAAGATCCCAGTGATTTCCCTCTTGACTTACGAGCACAGGTTCTTGACTGGTTGGCACATAGTCCTACAGACATGGAGAGCTACATTAAGCCTGGTTGTGTGGTTCTTACCATCTATCTACGTCAGACAGAGGATGCTTGGGAGGAACTTTGCTATGACATATGTTGTAGCTTGAACAGGCTCCTCCAAGGCTCAGATGATACTTTCTGGAGAACGGGATGGGTTTATGCCAGAATTCAGCATCATCTAGCATTTGCTTTTCATGGTCAAGTTATGGTGGATACGTCGTTATCTCTCAGAAGCTCCCATTATTGTAATATTGTCAGTGTAAAACCTATTGCCGTATCTGCTTCAGAAAGGATTCAGTTTTCAGTTAGAGGCTCGAACTTGAAGCGGCCTGGAACAAGGTTACTCTGTGCACTTGAAGGGAAGTATCTGACTGAGAAGGCAACTCAAGAATCACCTGACACTGATTCAGTGAAGGAGCATGATGATCATAATGAGCTGGAGTTCATCAGCTTTTCTTGTTCTATTCCGGTAGTAAATGGAAGGGGCTTCATTGAGGTTGAAGATCATGGATTCAGCAGCAGCTTCTTTCCATTTATAGTTGCGGAGGATGATGTATGTTCAGATATTTGTGTTCTTGAGGCTACTATGGAGTTGACTGATACGAGCTCAGATGCAACGGGAGTAACAGTGACGGAAGCAAGGAGGCAAGCCTTGGATTTTATTCATGAAATGGGGTGGCTTCTTCATAAGAAACAATTGAACTCTAGAATGAAGATTATGAATCCAGATGTAGATACTTACCCTTTGGATCGGTTCAAGTGGCTTATGGATTTCTCGATGAACCATGATTGGTGTGCTGTAGTGAGGACATTATTAAATATTCTGTTTGATGGAATTGTGAGTATTGGAGATCACCCCTCTCTGAATGAGGCCTTATTCGAGATGAGTCTTCTACACCGGGCTGTAAGGAGAAGCAGTAAGTCGCTTGTGGAGCTCCTTTTGAGATTCAAGCCCCAAAAAGTGACGACAGAAAACGAAGTGGTTGATGGATTTTTGTTTAGGCCTGATGCTGCAGGACCTGCCGGCTTGACCCCACTTCACATCGCAGCTGCTAAAGATGGGTCTGAGGATGTGCTTGATGCATTAACCGACGACCCTGGAATGGTTGGAATTGAAGCATGGAGGAATGCTCGTGACAGCACGGGGTCCACACCTGAAGCCTACGCTCGCTTACGTGGCCATTTTTCGTACATCCACCTCATCCAGAGGAAAATCAACAAGAGAGCTTCCTCTGGGCATGTGGTTCTCGATATTCCTAGTGTTGTTCCCTCGGATCATAGCACAAATGATAAGCAAACGGACAACTTGGGCAGCGCCTTTGAGATCAGACTGACCCAGCCGAGACCGAACTGCAGAGTCTGTGATAAGAAACTCAGATATGGAAAATTGAGACCATCACTGGTTTACCGGCCTGCAATGTTGTCGATGGTGGCTATTGCAGCCGTCTGTGTGTGTGTGGCACTTCTGTTCAAAAGCTCGCCGGAAGTCCTTTATGTATTCCGTCCGTTCAGGTGGGAGTTGTTAGATTATGGAACGTATTGA 2409 45.21 MNSVELRTVGNRSLEWDLNDWKWDGDLFLASSLNSVPSGTFRRQIFSNGTIPVTGGLSNSSSSCSDDVTMGIEKRKNEIEKRRRITGMEDRALNDESGGPILKLDSHGYHIPEREVGSWEGSSGKKTKLVGGSSNRAICQVEDCGADLSRAKDYHRRHKVCEMHSKASRALVGNLMQRFCQQCSRFHALQEFDEGKRSCRRRLAGHNKRRRKTNPESAANGSSSNEDQTSGYLLMSLLRILSNMHYHSADQDLISRTDRIVIKLFGKDPSDFPLDLRAQVLDWLAHSPTDMESYIKPGCVVLTIYLRQTEDAWEELCYDICCSLNRLLQGSDDTFWRTGWVYARIQHHLAFAFHGQVMVDTSLSLRSSHYCNIVSVKPIAVSASERIQFSVRGSNLKRPGTRLLCALEGKYLTEKATQESPDTDSVKEHDDHNELEFISFSCSIPVVNGRGFIEVEDHGFSSSFFPFIVAEDDVCSDICVLEATMELTDTSSDATGVTVTEARRQALDFIHEMGWLLHKKQLNSRMKIMNPDVDTYPLDRFKWLMDFSMNHDWCAVVRTLLNILFDGIVSIGDHPSLNEALFEMSLLHRAVRRSSKSLVELLLRFKPQKVTTENEVVDGFLFRPDAAGPAGLTPLHIAAAKDGSEDVLDALTDDPGMVGIEAWRNARDSTGSTPEAYARLRGHFSYIHLIQRKINKRASSGHVVLDIPSVVPSDHSTNDKQTDNLGSAFEIRLTQPRPNCRVCDKKLRYGKLRPSLVYRPAMLSMVAIAAVCVCVALLFKSSPEVLYVFRPFRWELLDYGTY 802
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 19270616 19275728 + Bma004769.1 Bma10g00932 89995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g00932 802 Gene3D - 563 703 IPR036770 -
Bma10g00932 802 Gene3D - 130 200 IPR036893 GO:0003677|GO:0005634
Bma10g00932 802 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 1-RELATED 248 801 - -
Bma10g00932 802 SUPERFAMILY SBT domain 137 218 IPR036893 GO:0003677|GO:0005634
Bma10g00932 802 ProSiteProfiles Zinc finger SBP-type profile. 136 213 IPR004333 GO:0003677
Bma10g00932 802 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 248 801 IPR044817 GO:0003677
Bma10g00932 802 SUPERFAMILY Ankyrin repeat 582 690 IPR036770 -
Bma10g00932 802 MobiDBLite consensus disorder prediction 202 227 - -
Bma10g00932 802 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 8 255 IPR044817 GO:0003677
Bma10g00932 802 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 1-RELATED 8 255 - -
Bma10g00932 802 Pfam SBP domain 139 212 IPR004333 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00265 Bma-Chr8:3530611 Bma10g00932 Bma-Chr10:19270616 2.73E-34 dispersed
Bma10g00932 Bma-Chr10:19270616 Bma13g00158 Bma-Chr13:1799600 3.51E-130 dispersed
Bma02g01384 Bma-Chr2:56151178 Bma10g00932 Bma-Chr10:19270616 7.92E-29 transposed
Bma10g00932 Bma-Chr10:19270616 Bma13g00108 Bma-Chr13:1098280 7.33E-130 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57960 PF03110 SBP 2.80E-29 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g00932 - - jre:108999895 752.666