Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g00947 ATGGATCTTCTGGGAGTTGAAAAACTCTCTGTTCCATCCCTTTTTGATTTTCCATCTCTCCCTATTTTCACTTCAAATCCAAAAAACGATCATCTCAAAGAGAGTTCCGAAGTTTTCAATCATCCTCCCACTCCTAACTCTCCCTCCATCTCATCTGCTTCTTGTGAAGATGCAGTAAATTATAATCAGCACCAAGCTAAAGCTCTGAACCAGGAAGAAGAACGTGAGAAAAAGACTCGAAACCATTTGAAAGCGAAGAAGAAAGATGTAAAGAGGGAGAGAGAGCCAAGATTTGCATTCATGACGAAGAGCGAAGTTGATCATCTGGAAGATGGGTATAGATGGAGAAAGTACGGCCAAAAAGCTGTGAAGAACAGCCCTTTTCCTAGGAGCTACTATCGTTGCACTAGCGCAGCCTGTAATGTAAAGAAAAGAGTAGAACGATCTTTCAGCGATCCAACCATTGTAGTCACAACCTACGAAGGCCAGCACACGCACCCAAGCCCTGTCATAGCTCGACCAACCTTGACCATGGCTGCACCACACGGTTTGGCCACAGCAAATCAAACCACAACCCTATCTCGCTTTCACTACCAAGACTACGGCAGCAATAACTTCTCTCCAAACGCAGCGTTCTTCGGTGAGAGGCGAGCTTGTAAGCAAGAACCTGCTTCGGCTTTAATGACGGACAATGGACTTCTCCAAGATATTATACCCTCTCATATGCTGAAGCAGGAGTAA 741 44.94 MDLLGVEKLSVPSLFDFPSLPIFTSNPKNDHLKESSEVFNHPPTPNSPSISSASCEDAVNYNQHQAKALNQEEEREKKTRNHLKAKKKDVKREREPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTSAACNVKKRVERSFSDPTIVVTTYEGQHTHPSPVIARPTLTMAAPHGLATANQTTTLSRFHYQDYGSNNFSPNAAFFGERRACKQEPASALMTDNGLLQDIIPSHMLKQE 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 20283799 20285276 - Bma004799.1 Bma10g00947 90010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g00947 246 MobiDBLite consensus disorder prediction 66 92 - -
Bma10g00947 246 ProSiteProfiles WRKY domain profile. 104 169 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma10g00947 246 PANTHER WRKY TRANSCRIPTION FACTOR 1 237 - -
Bma10g00947 246 Pfam WRKY DNA -binding domain 110 167 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma10g00947 246 Gene3D WRKY domain 94 170 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bma10g00947 246 MobiDBLite consensus disorder prediction 39 54 - -
Bma10g00947 246 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 1 237 IPR044810 GO:0003700
Bma10g00947 246 MobiDBLite consensus disorder prediction 33 54 - -
Bma10g00947 246 SMART WRKY_cls 109 168 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma10g00947 246 Coils Coil 61 93 - -
Bma10g00947 246 SUPERFAMILY WRKY DNA-binding domain 101 169 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00731 Bma-Chr6:38296601 Bma10g00947 Bma-Chr10:20283799 1.94E-43 dispersed
Bma06g01458 Bma-Chr6:51257200 Bma10g00947 Bma-Chr10:20283799 8.23E-40 dispersed
Bma10g00947 Bma-Chr10:20283799 Bma10g01123 Bma-Chr10:36032713 1.31E-45 dispersed
Bma10g00947 Bma-Chr10:20283799 Bma02g00935 Bma-Chr2:49202332 9.60E-69 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57961 PF03106 WRKY 1.10E-26 CL0274 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g00947 - - jre:108993709 273.092