Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g00996 ATAATGGAGTGCCAGAATCAGCAGCAAAACCGAGAAGAGCAACTACCAATGCATATGCCAATTGATCATCAGTTGCAGAACCCCGATGGGTTGTTCGTGAAGGTGATGACGGACGAGCAAATGGAGCTTCTCCGGCGGCAGATCTCTGTCTACGCTTTCATTTGTGAACAGCTTGTCGAGATGCACAAGGCTATGACCGCCCAACAGGAACTTACTGGTATCTGGAATCTATATTATGATCCAATGACGGCATCTAGCGGGCACAAGATTACGGCTCGGCAAAGGTGGACGCCAACGCCTATGCAGCTTCAAATACTCGAGCATATTTTTGACGAAGGAAATGGCGCTCCAAGTACGCAGAGGACGCAGAGGATTAGGGAGATAACTATCGACCTTTCACAACATGGGCAAATCTTGGAAGCAAATGTGTATAATTGGTTCCAGAACAGAAGAGCGCGCAGTAAAAGAAAGCAGTCAGCTTCAATCCCTAACAATGCAGATTCAGAAGTGGAAACAGAAGTAGAGTCTCCAAAGGCAGTGGGTGTCCCATCATTTGAGAATCATGCACATAGAAGTGGTGATGTCTACGGGAAATCAGAGTTAGGCGTTGAAATGCAGGGCTTGGATGGACGCAACCTGTTTTTCACTTGA 651 47.0 IMECQNQQQNREEQLPMHMPIDHQLQNPDGLFVKVMTDEQMELLRRQISVYAFICEQLVEMHKAMTAQQELTGIWNLYYDPMTASSGHKITARQRWTPTPMQLQILEHIFDEGNGAPSTQRTQRIREITIDLSQHGQILEANVYNWFQNRRARSKRKQSASIPNNADSEVETEVESPKAVGVPSFENHAHRSGDVYGKSELGVEMQGLDGRNLFFT 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 23492870 23493984 + Bma004874.1 Bma10g00996 90059
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g00996 216 PANTHER - 2 210 - -
Bma10g00996 216 ProSiteProfiles 'Homeobox' domain profile. 89 157 IPR001356 GO:0003677
Bma10g00996 216 CDD homeodomain 93 158 IPR001356 GO:0003677
Bma10g00996 216 Gene3D - 94 161 - -
Bma10g00996 216 PANTHER WUSCHEL-RELATED HOMEOBOX 13 2 210 IPR044559 GO:0003700
Bma10g00996 216 MobiDBLite consensus disorder prediction 154 174 - -
Bma10g00996 216 SUPERFAMILY Homeodomain-like 92 160 IPR009057 -
Bma10g00996 216 Pfam Homeodomain 93 156 IPR001356 GO:0003677
Bma10g00996 216 SMART HOX_1 91 161 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02412 Bma-Chr1:81704465 Bma10g00996 Bma-Chr10:23492870 1.06E-106 dispersed
Bma06g00075 Bma-Chr6:1177395 Bma10g00996 Bma-Chr10:23492870 4.41E-41 dispersed
Bma10g00996 Bma-Chr10:23492870 Bma06g00064 Bma-Chr6:1029892 2.55E-10 dispersed
Bma10g00996 Bma-Chr10:23492870 Bma04g00291 Bma-Chr4:2338187 2.05E-148 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57963 PF00046 Homeodomain 2.50E-14 CL0123 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g00996 - - bhj:120085747 247.284