Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g00996 ATAATGGAGTGCCAGAATCAGCAGCAAAACCGAGAAGAGCAACTACCAATGCATATGCCAATTGATCATCAGTTGCAGAACCCCGATGGGTTGTTCGTGAAGGTGATGACGGACGAGCAAATGGAGCTTCTCCGGCGGCAGATCTCTGTCTACGCTTTCATTTGTGAACAGCTTGTCGAGATGCACAAGGCTATGACCGCCCAACAGGAACTTACTGGTATCTGGAATCTATATTATGATCCAATGACGGCATCTAGCGGGCACAAGATTACGGCTCGGCAAAGGTGGACGCCAACGCCTATGCAGCTTCAAATACTCGAGCATATTTTTGACGAAGGAAATGGCGCTCCAAGTACGCAGAGGACGCAGAGGATTAGGGAGATAACTATCGACCTTTCACAACATGGGCAAATCTTGGAAGCAAATGTGTATAATTGGTTCCAGAACAGAAGAGCGCGCAGTAAAAGAAAGCAGTCAGCTTCAATCCCTAACAATGCAGATTCAGAAGTGGAAACAGAAGTAGAGTCTCCAAAGGCAGTGGGTGTCCCATCATTTGAGAATCATGCACATAGAAGTGGTGATGTCTACGGGAAATCAGAGTTAGGCGTTGAAATGCAGGGCTTGGATGGACGCAACCTGTTTTTCACTTGA 651 47.0 IMECQNQQQNREEQLPMHMPIDHQLQNPDGLFVKVMTDEQMELLRRQISVYAFICEQLVEMHKAMTAQQELTGIWNLYYDPMTASSGHKITARQRWTPTPMQLQILEHIFDEGNGAPSTQRTQRIREITIDLSQHGQILEANVYNWFQNRRARSKRKQSASIPNNADSEVETEVESPKAVGVPSFENHAHRSGDVYGKSELGVEMQGLDGRNLFFT 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 23492870 23493984 + Bma004874.1 Bma10g00996 90059

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g00996 216 PANTHER - 2 210 - -
Bma10g00996 216 ProSiteProfiles 'Homeobox' domain profile. 89 157 IPR001356 GO:0003677
Bma10g00996 216 CDD homeodomain 93 158 IPR001356 GO:0003677
Bma10g00996 216 Gene3D - 94 161 - -
Bma10g00996 216 PANTHER WUSCHEL-RELATED HOMEOBOX 13 2 210 IPR044559 GO:0003700
Bma10g00996 216 MobiDBLite consensus disorder prediction 154 174 - -
Bma10g00996 216 SUPERFAMILY Homeodomain-like 92 160 IPR009057 -
Bma10g00996 216 Pfam Homeodomain 93 156 IPR001356 GO:0003677
Bma10g00996 216 SMART HOX_1 91 161 IPR001356 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g00996 - - - bhj:120085747 247.284
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02412 Bma-Chr1:81704465 Bma10g00996 Bma-Chr10:23492870 1.06E-106 dispersed
Bma06g00075 Bma-Chr6:1177395 Bma10g00996 Bma-Chr10:23492870 4.41E-41 dispersed
Bma10g00996 Bma-Chr10:23492870 Bma06g00064 Bma-Chr6:1029892 2.55E-10 dispersed
Bma10g00996 Bma-Chr10:23492870 Bma04g00291 Bma-Chr4:2338187 2.05E-148 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma01g02412 BCT 1 216 Wox Gene Family AT4G35550 53.4 9.0e-60 227.3
Bma04g00291 BCT 30 171 Wox Gene Family AT4G35550 67.1 6.5e-50 194.5
Bma10g00996 . 30 176 Wox Gene Family AT4G35550 65.1 6.1e-48 188.0
Bma05g00042 BCT 5 151 Wox Gene Family AT1G46480 66.7 4.6e-50 194.5
Bma01g00657 BCT 3 148 Wox Gene Family AT1G46480 61.9 1.5e-45 179.5
Bma05g00042 BCT 5 151 Wox Gene Family AT1G46480 66.7 4.6e-50 194.5
Bma01g00657 BCT 3 148 Wox Gene Family AT1G46480 61.9 1.5e-45 179.5
Bma01g02412 BCT 1 216 Wox Gene Family AT4G35550 53.4 9.0e-60 227.3
Bma04g00291 BCT 30 171 Wox Gene Family AT4G35550 67.1 6.5e-50 194.5
Bma10g00996 . 30 176 Wox Gene Family AT4G35550 65.1 6.1e-48 188.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001223 3 4 2 3 2 1 4 1 1 2 2 2 4 2 2 3 1 2 3 1 2 2 2 2 2 2 1 8 3 3 72
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57963 PF00046 Homeodomain 2.50E-14 CL0123 Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma10g00996 Bma_Chr10 FPKM 21.65 23.241701 36.246979 36.786865 20.211168 19.762852 19.787455 20.848618 20.240961 20.137617