Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g01002 ATGTCGCCGATCAAGGTTCATGGTACTCCTTTCTCAACCGCCGCTGCTCGCGTTCTCTGCTGTCTTTTCGAGAAAGATATCGAGTTCGACTTCGTCCTTGTTGATTTGAGAACTGGCGAACACAAGAAGGAGCCTTTCATCTCCCTCAATCCATTTGGCCATGTTCCAGGGTTTGAAGATGGAGATCTATCGCTATTCGTACCTTGTTTATGCGGTGCCTATCCTGAAAAGGCAGCCCATTTGATACCTTCGGACAAGAAGGAAATGGGTACAACATTGACATGGATGAATGTGGAGGCTCACCAATACGACCCCCCTGCGTCCAAGCTGGCTTTCGAGCTGTTTGTGAAGCCCATGCTGGGAATGGGGGCTGCCGATGCAGCAGCGGTGGCGGAAAATGAAGCTAAGTTGTGTAAAGTTCTGGATATATACAAAGTTAAATTGTCCAAGACGAAATACTTGGCTGGCGACTGCTTCACTCTGGCCGATCTGTATCATCTTCCTACTCTTACCTATTTGATGGCCACAGATGCTAAGAAGGTATTCGAATCACGCCCACATGTCAATCTCTGGGTTACTGAGATTATGTCCAGGCCATCTTGGGGTAAGGTCCTGGCAATGAGAAACACAGCTTGA 636 48.11 MSPIKVHGTPFSTAAARVLCCLFEKDIEFDFVLVDLRTGEHKKEPFISLNPFGHVPGFEDGDLSLFVPCLCGAYPEKAAHLIPSDKKEMGTTLTWMNVEAHQYDPPASKLAFELFVKPMLGMGAADAAAVAENEAKLCKVLDIYKVKLSKTKYLAGDCFTLADLYHLPTLTYLMATDAKKVFESRPHVNLWVTEIMSRPSWGKVLAMRNTA 211
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 23846156 23847037 - Bma004887.1 Bma10g01002 90065

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g01002 211 Pfam Glutathione S-transferase, C-terminal domain 105 199 IPR004046 -
Bma10g01002 211 Gene3D Glutaredoxin 1 85 - -
Bma10g01002 211 PANTHER GLUTATHIONE S-TRANSFERASE RHO 4 210 - -
Bma10g01002 211 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 2 86 IPR004045 -
Bma10g01002 211 Pfam Glutathione S-transferase, N-terminal domain 3 66 IPR004045 -
Bma10g01002 211 Gene3D - 86 209 - -
Bma10g01002 211 SUPERFAMILY Thioredoxin-like 1 66 IPR036249 -
Bma10g01002 211 SFLD Main (cytGST) 1 208 - -
Bma10g01002 211 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 85 211 IPR010987 -
Bma10g01002 211 SFLD Main.5: Phi-like 1 208 - -
Bma10g01002 211 SUPERFAMILY GST C-terminal domain-like 80 206 IPR036282 -
Bma10g01002 211 CDD GST_C_Phi 87 205 IPR034347 -
Bma10g01002 211 PANTHER GLUTATHIONE S-TRANSFERASE F6-RELATED 4 210 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g01002 K00799 GST, gst; glutathione S-transferase [EC:2.5.1.18] - csv:101212771 269.24
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma10g01002 Bma-Chr10:23846156 Bma14g01123 Bma-Chr14:14207084 6.21E-50 dispersed
Bma04g01390 Bma-Chr4:48154233 Bma10g01002 Bma-Chr10:23846156 2.39E-74 transposed
Bma05g00815 Bma-Chr5:45460686 Bma10g01002 Bma-Chr10:23846156 7.30E-06 transposed
Bma13g00392 Bma-Chr13:7149386 Bma10g01002 Bma-Chr10:23846156 1.07E-148 transposed
Bma10g01002 Bma-Chr10:23846156 Bma13g00049 Bma-Chr13:650788 1.22E-47 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma10g01002 . 1 205 Glutathione S-transferase Gene Family AT2G02930 50.2 1.1e-52 203.4
Bma13g00392 . 1 220 Glutathione S-transferase Gene Family AT2G47730 51.1 1.2e-56 216.9
Bma10g01002 . 1 208 Glutathione S-transferase Gene Family AT2G47730 51.9 1.6e-56 216.5
Bma14g01123 . 1 212 Glutathione S-transferase Gene Family AT3G03190 59.4 5.7e-73 270.8
Bma14g01123 . 1 214 Glutathione S-transferase Gene Family AT5G17220 59.8 2.0e-73 272.3
Bma01g01846 . 3 216 Glutathione S-transferase Gene Family AT3G09270 55.3 4.0e-69 258.1
Bma01g01843 . 3 189 Glutathione S-transferase Gene Family AT3G09270 57.4 6.4e-59 224.2
Bma13g00909 . 1 234 Glutathione S-transferase Gene Family AT1G78380 63.7 4.6e-86 314.3
Bma13g00910 . 1 209 Glutathione S-transferase Gene Family AT1G78380 65.1 1.8e-82 302.4
Bma10g00468 . 1 212 Glutathione S-transferase Gene Family AT1G78380 63.6 2.0e-81 298.9
Bma13g00909 . 1 232 Glutathione S-transferase Gene Family AT1G78370 58.6 9.2e-79 290.0
Bma13g00910 . 1 212 Glutathione S-transferase Gene Family AT1G78370 61.3 3.9e-77 284.6
Bma10g00468 . 1 214 Glutathione S-transferase Gene Family AT1G78370 60.2 1.9e-76 282.3
Bma13g00909 . 1 234 Glutathione S-transferase Gene Family AT1G78340 59.0 9.9e-81 296.6
Bma13g00910 . 1 211 Glutathione S-transferase Gene Family AT1G78340 63.0 2.9e-80 295.0
Bma10g00468 . 1 212 Glutathione S-transferase Gene Family AT1G78340 60.7 4.6e-78 287.7
Bma10g00468 . 1 212 Glutathione S-transferase Gene Family AT1G78320 51.4 1.0e-57 219.9
Bma13g00910 . 1 205 Glutathione S-transferase Gene Family AT1G78320 53.2 2.3e-57 218.8
Bma13g00909 . 1 237 Glutathione S-transferase Gene Family AT1G17180 60.8 4.6e-86 314.3
Bma10g00468 . 1 217 Glutathione S-transferase Gene Family AT1G17180 63.5 4.3e-84 307.8
Bma13g00910 . 1 209 Glutathione S-transferase Gene Family AT1G17180 63.6 8.2e-83 303.5
Bma13g00909 . 3 235 Glutathione S-transferase Gene Family AT1G17190 54.5 2.4e-74 275.4
Bma13g00910 . 3 209 Glutathione S-transferase Gene Family AT1G17190 57.5 3.2e-71 265.0
Bma10g00468 . 3 215 Glutathione S-transferase Gene Family AT1G17190 55.8 4.2e-71 264.6
Bma13g00910 . 3 215 Glutathione S-transferase Gene Family AT3G43800 51.6 2.4e-61 232.3
Bma13g00909 . 4 237 Glutathione S-transferase Gene Family AT1G53680 54.0 1.8e-69 259.2
Bma13g00910 . 4 216 Glutathione S-transferase Gene Family AT1G53680 57.8 6.8e-69 257.3
Bma10g00468 . 4 217 Glutathione S-transferase Gene Family AT1G53680 53.2 3.7e-67 251.5
Bma14g01714 . 53 220 Glutathione S-transferase Gene Family AT2G02390 58.3 6.7e-57 217.2
Bma06g01222 . 58 224 Glutathione S-transferase Gene Family AT2G02390 53.3 4.4e-48 188.0
Bma14g01714 . 11 223 Glutathione S-transferase Gene Family AT2G02380 61.0 5.9e-73 270.8
Bma06g01222 . 15 223 Glutathione S-transferase Gene Family AT2G02380 54.1 1.0e-61 233.4
Bma05g00815 . 1 244 Glutathione S-transferase Gene Family AT5G41210 68.9 4.9e-97 350.9
Bma05g00815 . 1 250 Glutathione S-transferase Gene Family AT5G41240 66.8 5.5e-94 342.0
Bma10g00017 . 10 226 Glutathione S-transferase Gene Family AT5G02780 64.8 2.9e-78 288.5
Bma10g00017 . 8 231 Glutathione S-transferase Gene Family AT3G55040 58.2 8.3e-75 277.3
Bma10g00017 . 7 227 Glutathione S-transferase Gene Family AT5G02790 66.2 7.9e-84 307.0
Bma03g00309 . 1 237 Glutathione S-transferase Gene Family AT1G19570 60.5 1.8e-79 292.4
Bma01g01148 . 64 271 Glutathione S-transferase Gene Family AT1G19570 57.9 4.5e-70 261.2
Bma08g01128 . 1 241 Glutathione S-transferase Gene Family AT1G19570 51.7 4.2e-68 254.6
Bma03g00309 . 1 238 Glutathione S-transferase Gene Family AT1G75270 61.5 9.6e-81 296.6
Bma08g01128 . 1 209 Glutathione S-transferase Gene Family AT1G75270 63.8 7.4e-73 270.4
Bma01g01148 . 64 271 Glutathione S-transferase Gene Family AT1G75270 57.4 9.0e-71 263.5
Bma01g01148 . 53 273 Glutathione S-transferase Gene Family AT5G16710 71.9 1.4e-97 352.8
Bma08g01128 . 3 211 Glutathione S-transferase Gene Family AT5G16710 52.6 3.9e-60 228.4
Bma01g02091 . 1 267 Glutathione S-transferase Gene Family AT1G77290 66.8 1.0e-100 363.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000808 1 3 1 2 2 3 3 3 3 3 2 3 3 3 3 3 3 7 3 3 3 3 2 2 6 3 3 5 5 1 90
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma10g01002 Bma_Chr10 FPKM 6.086395 6.889961 34.617882 35.013149 96.193413 91.35762 99.531059 16.04669 16.959595 18.361567