Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g01002 ATGTCGCCGATCAAGGTTCATGGTACTCCTTTCTCAACCGCCGCTGCTCGCGTTCTCTGCTGTCTTTTCGAGAAAGATATCGAGTTCGACTTCGTCCTTGTTGATTTGAGAACTGGCGAACACAAGAAGGAGCCTTTCATCTCCCTCAATCCATTTGGCCATGTTCCAGGGTTTGAAGATGGAGATCTATCGCTATTCGTACCTTGTTTATGCGGTGCCTATCCTGAAAAGGCAGCCCATTTGATACCTTCGGACAAGAAGGAAATGGGTACAACATTGACATGGATGAATGTGGAGGCTCACCAATACGACCCCCCTGCGTCCAAGCTGGCTTTCGAGCTGTTTGTGAAGCCCATGCTGGGAATGGGGGCTGCCGATGCAGCAGCGGTGGCGGAAAATGAAGCTAAGTTGTGTAAAGTTCTGGATATATACAAAGTTAAATTGTCCAAGACGAAATACTTGGCTGGCGACTGCTTCACTCTGGCCGATCTGTATCATCTTCCTACTCTTACCTATTTGATGGCCACAGATGCTAAGAAGGTATTCGAATCACGCCCACATGTCAATCTCTGGGTTACTGAGATTATGTCCAGGCCATCTTGGGGTAAGGTCCTGGCAATGAGAAACACAGCTTGA 636 48.11 MSPIKVHGTPFSTAAARVLCCLFEKDIEFDFVLVDLRTGEHKKEPFISLNPFGHVPGFEDGDLSLFVPCLCGAYPEKAAHLIPSDKKEMGTTLTWMNVEAHQYDPPASKLAFELFVKPMLGMGAADAAAVAENEAKLCKVLDIYKVKLSKTKYLAGDCFTLADLYHLPTLTYLMATDAKKVFESRPHVNLWVTEIMSRPSWGKVLAMRNTA 211
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 23846156 23847037 - Bma004887.1 Bma10g01002 90065
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g01002 211 Pfam Glutathione S-transferase, C-terminal domain 105 199 IPR004046 -
Bma10g01002 211 Gene3D Glutaredoxin 1 85 - -
Bma10g01002 211 PANTHER GLUTATHIONE S-TRANSFERASE RHO 4 210 - -
Bma10g01002 211 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 2 86 IPR004045 -
Bma10g01002 211 Pfam Glutathione S-transferase, N-terminal domain 3 66 IPR004045 -
Bma10g01002 211 Gene3D - 86 209 - -
Bma10g01002 211 SUPERFAMILY Thioredoxin-like 1 66 IPR036249 -
Bma10g01002 211 SFLD Main (cytGST) 1 208 - -
Bma10g01002 211 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 85 211 IPR010987 -
Bma10g01002 211 SFLD Main.5: Phi-like 1 208 - -
Bma10g01002 211 SUPERFAMILY GST C-terminal domain-like 80 206 IPR036282 -
Bma10g01002 211 CDD GST_C_Phi 87 205 IPR034347 -
Bma10g01002 211 PANTHER GLUTATHIONE S-TRANSFERASE F6-RELATED 4 210 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma10g01002 Bma-Chr10:23846156 Bma14g01123 Bma-Chr14:14207084 6.21E-50 dispersed
Bma04g01390 Bma-Chr4:48154233 Bma10g01002 Bma-Chr10:23846156 2.39E-74 transposed
Bma05g00815 Bma-Chr5:45460686 Bma10g01002 Bma-Chr10:23846156 7.30E-06 transposed
Bma13g00392 Bma-Chr13:7149386 Bma10g01002 Bma-Chr10:23846156 1.07E-148 transposed
Bma10g01002 Bma-Chr10:23846156 Bma13g00049 Bma-Chr13:650788 1.22E-47 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g01002 K00799 - csv:101212771 269.24