Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g01052 ATGCGAACTGGGTTCTGTGGGTATGGAAGCAGATGTCGTTTCAATCATCCTCGCGATCGTGCTGCGGTCGTAGCTGCTGTAAGAGCTACTGGGGATTACCCAGAACGAGTAGGGGAACCTGTGTGTCAGTATTATTTGAAAACTGGAACGTGTAAATTTGGTGCATCCTGCAAGTTTCACCATCCAAAACATGGAGGCGGATCCCTGAACCAGGCTCCTCTTAATATCTTTGGTTACCCACTTCGACCGGGTGAGAGAGAATGCTCCTACTATTTAAAAACGGGGCAGTGCAAATTTGGTATAACCTGTAAATTCCATCATCCTCAAATAGCTGGCTCATCCACGCCAAACACCACTCCTCAATTTTATCCATCGGTGCAGTCTCCTTCAGTTCCTATGCCTGACCAATATGGAGTGGCATCCACTAGCTTGAGGGTAGCCAGGCCACCTATTTTACCTGGTTCTTATGTGCAAGGGACCTATGGTCCTGTTTTGCTTCCCCCAGGAGTTGTTCCAATTCCAGGATGGAGTCCATACTCGGCACCTATAAGCCCTGCCTTATCTCCGGGTGCTCCACACACAGTTGGAGCAACTTCTGTTTATGGAGTAGCCCAGCTGTCTTCTACAACCTCATCTCTTCCACGACCCTATTCCTCTTTACCTTCATCTGTTGGCCCTTCTAGCAGTAGGGAACAGTTGTTTCCAGAGAGACCTGGTGAACCTGAATGCCAGTATTACATAAGAACTGGTGACTGCAAGTTTGGCCTAGCTTGTCGATATCATCATCCTCACAACCGGATTTTACCTAGGACAAATTGTGTTCTTAGTGCACTTGGCCTTCCCTTGCGACCGGGGGTTGAGCCTTGTACATTTTACTTGCAAAATGGACACTGCAAATTCGGATCAACCTGTAAGTTTGATCATCCTATGGGGACAATGAGATACAGTCCATCAGCCTCTTCTCTCATCAACATGCCCGTTGCTCCTTATCCTGTAGGGTCCCTGCTTGCCACTTTGGCTCCTTCATCATCTTCTTCTGAGCTTAAACCAGAGCTGATGTCTGGATCAAGGAAAGAGTCATATTCAGCTAGATTGCCTTCTTCTGGCAGTACCTCAAGTAGTACAGTTGGTTTAATTTACTCTCAGACTGGATCTAGTGTGCAACTTTCTAGTCAAAGTACTGCTCCTTTGAACAACAGCAGGAACACTAGACAAGGTGGTGAGACAAGGCATACGAATTAG 1242 47.02 MRTGFCGYGSRCRFNHPRDRAAVVAAVRATGDYPERVGEPVCQYYLKTGTCKFGASCKFHHPKHGGGSLNQAPLNIFGYPLRPGERECSYYLKTGQCKFGITCKFHHPQIAGSSTPNTTPQFYPSVQSPSVPMPDQYGVASTSLRVARPPILPGSYVQGTYGPVLLPPGVVPIPGWSPYSAPISPALSPGAPHTVGATSVYGVAQLSSTTSSLPRPYSSLPSSVGPSSSREQLFPERPGEPECQYYIRTGDCKFGLACRYHHPHNRILPRTNCVLSALGLPLRPGVEPCTFYLQNGHCKFGSTCKFDHPMGTMRYSPSASSLINMPVAPYPVGSLLATLAPSSSSSELKPELMSGSRKESYSARLPSSGSTSSSTVGLIYSQTGSSVQLSSQSTAPLNNSRNTRQGGETRHTN 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 28823741 28827451 - Bma004982.1 Bma10g01052 90115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g01052 413 PANTHER PROTEIN PHOSPHATASE RELATED 1 393 - -
Bma10g01052 413 SUPERFAMILY CCCH zinc finger 85 109 IPR036855 GO:0046872
Bma10g01052 413 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 58 1 393 - -
Bma10g01052 413 MobiDBLite consensus disorder prediction 209 230 - -
Bma10g01052 413 SMART c3hfinal6 283 310 IPR000571 GO:0046872
Bma10g01052 413 SMART c3hfinal6 237 264 IPR000571 GO:0046872
Bma10g01052 413 SMART c3hfinal6 1 18 IPR000571 GO:0046872
Bma10g01052 413 SMART c3hfinal6 36 63 IPR000571 GO:0046872
Bma10g01052 413 SMART c3hfinal6 82 109 IPR000571 GO:0046872
Bma10g01052 413 Gene3D - 236 321 - -
Bma10g01052 413 Gene3D - 1 65 - -
Bma10g01052 413 SUPERFAMILY CCCH zinc finger 285 314 IPR036855 GO:0046872
Bma10g01052 413 ProSiteProfiles Zinc finger C3H1-type profile. 237 265 IPR000571 GO:0046872
Bma10g01052 413 ProSiteProfiles Zinc finger C3H1-type profile. 82 110 IPR000571 GO:0046872
Bma10g01052 413 SUPERFAMILY CCCH zinc finger 242 266 IPR036855 GO:0046872
Bma10g01052 413 MobiDBLite consensus disorder prediction 360 407 - -
Bma10g01052 413 Gene3D - 67 117 - -
Bma10g01052 413 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 39 63 IPR000571 GO:0046872
Bma10g01052 413 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 84 109 IPR000571 GO:0046872
Bma10g01052 413 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 285 310 IPR000571 GO:0046872
Bma10g01052 413 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 239 263 IPR000571 GO:0046872
Bma10g01052 413 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 1 18 IPR000571 GO:0046872
Bma10g01052 413 SUPERFAMILY CCCH zinc finger 39 63 IPR036855 GO:0046872
Bma10g01052 413 MobiDBLite consensus disorder prediction 209 236 - -
Bma10g01052 413 ProSiteProfiles Zinc finger C3H1-type profile. 283 311 IPR000571 GO:0046872
Bma10g01052 413 ProSiteProfiles Zinc finger C3H1-type profile. 1 19 IPR000571 GO:0046872
Bma10g01052 413 MobiDBLite consensus disorder prediction 345 413 - -
Bma10g01052 413 ProSiteProfiles Zinc finger C3H1-type profile. 36 64 IPR000571 GO:0046872
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma10g01052 Bma-Chr10:28823741 Bma14g01187 Bma-Chr14:17621737 1.79E-15 dispersed
Bma10g01052 Bma-Chr10:28823741 Bma13g00044 Bma-Chr13:499466 9.47E-15 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57967 PF00642 zf-CCCH 1.10E-09 CL0537 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g01052 - - tcc:18613492 659.448