Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma10g01052 | ATGCGAACTGGGTTCTGTGGGTATGGAAGCAGATGTCGTTTCAATCATCCTCGCGATCGTGCTGCGGTCGTAGCTGCTGTAAGAGCTACTGGGGATTACCCAGAACGAGTAGGGGAACCTGTGTGTCAGTATTATTTGAAAACTGGAACGTGTAAATTTGGTGCATCCTGCAAGTTTCACCATCCAAAACATGGAGGCGGATCCCTGAACCAGGCTCCTCTTAATATCTTTGGTTACCCACTTCGACCGGGTGAGAGAGAATGCTCCTACTATTTAAAAACGGGGCAGTGCAAATTTGGTATAACCTGTAAATTCCATCATCCTCAAATAGCTGGCTCATCCACGCCAAACACCACTCCTCAATTTTATCCATCGGTGCAGTCTCCTTCAGTTCCTATGCCTGACCAATATGGAGTGGCATCCACTAGCTTGAGGGTAGCCAGGCCACCTATTTTACCTGGTTCTTATGTGCAAGGGACCTATGGTCCTGTTTTGCTTCCCCCAGGAGTTGTTCCAATTCCAGGATGGAGTCCATACTCGGCACCTATAAGCCCTGCCTTATCTCCGGGTGCTCCACACACAGTTGGAGCAACTTCTGTTTATGGAGTAGCCCAGCTGTCTTCTACAACCTCATCTCTTCCACGACCCTATTCCTCTTTACCTTCATCTGTTGGCCCTTCTAGCAGTAGGGAACAGTTGTTTCCAGAGAGACCTGGTGAACCTGAATGCCAGTATTACATAAGAACTGGTGACTGCAAGTTTGGCCTAGCTTGTCGATATCATCATCCTCACAACCGGATTTTACCTAGGACAAATTGTGTTCTTAGTGCACTTGGCCTTCCCTTGCGACCGGGGGTTGAGCCTTGTACATTTTACTTGCAAAATGGACACTGCAAATTCGGATCAACCTGTAAGTTTGATCATCCTATGGGGACAATGAGATACAGTCCATCAGCCTCTTCTCTCATCAACATGCCCGTTGCTCCTTATCCTGTAGGGTCCCTGCTTGCCACTTTGGCTCCTTCATCATCTTCTTCTGAGCTTAAACCAGAGCTGATGTCTGGATCAAGGAAAGAGTCATATTCAGCTAGATTGCCTTCTTCTGGCAGTACCTCAAGTAGTACAGTTGGTTTAATTTACTCTCAGACTGGATCTAGTGTGCAACTTTCTAGTCAAAGTACTGCTCCTTTGAACAACAGCAGGAACACTAGACAAGGTGGTGAGACAAGGCATACGAATTAG | 1242 | 47.02 | MRTGFCGYGSRCRFNHPRDRAAVVAAVRATGDYPERVGEPVCQYYLKTGTCKFGASCKFHHPKHGGGSLNQAPLNIFGYPLRPGERECSYYLKTGQCKFGITCKFHHPQIAGSSTPNTTPQFYPSVQSPSVPMPDQYGVASTSLRVARPPILPGSYVQGTYGPVLLPPGVVPIPGWSPYSAPISPALSPGAPHTVGATSVYGVAQLSSTTSSLPRPYSSLPSSVGPSSSREQLFPERPGEPECQYYIRTGDCKFGLACRYHHPHNRILPRTNCVLSALGLPLRPGVEPCTFYLQNGHCKFGSTCKFDHPMGTMRYSPSASSLINMPVAPYPVGSLLATLAPSSSSSELKPELMSGSRKESYSARLPSSGSTSSSTVGLIYSQTGSSVQLSSQSTAPLNNSRNTRQGGETRHTN | 413 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 28823741 | 28827451 | - | Bma004982.1 | Bma10g01052 | 90115 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma10g01052 | 413 | PANTHER | PROTEIN PHOSPHATASE RELATED | 1 | 393 | - | - | |
Bma10g01052 | 413 | SUPERFAMILY | CCCH zinc finger | 85 | 109 | IPR036855 | GO:0046872 | |
Bma10g01052 | 413 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 58 | 1 | 393 | - | - | |
Bma10g01052 | 413 | MobiDBLite | consensus disorder prediction | 209 | 230 | - | - | |
Bma10g01052 | 413 | SMART | c3hfinal6 | 283 | 310 | IPR000571 | GO:0046872 | |
Bma10g01052 | 413 | SMART | c3hfinal6 | 237 | 264 | IPR000571 | GO:0046872 | |
Bma10g01052 | 413 | SMART | c3hfinal6 | 1 | 18 | IPR000571 | GO:0046872 | |
Bma10g01052 | 413 | SMART | c3hfinal6 | 36 | 63 | IPR000571 | GO:0046872 | |
Bma10g01052 | 413 | SMART | c3hfinal6 | 82 | 109 | IPR000571 | GO:0046872 | |
Bma10g01052 | 413 | Gene3D | - | 236 | 321 | - | - | |
Bma10g01052 | 413 | Gene3D | - | 1 | 65 | - | - | |
Bma10g01052 | 413 | SUPERFAMILY | CCCH zinc finger | 285 | 314 | IPR036855 | GO:0046872 | |
Bma10g01052 | 413 | ProSiteProfiles | Zinc finger C3H1-type profile. | 237 | 265 | IPR000571 | GO:0046872 | |
Bma10g01052 | 413 | ProSiteProfiles | Zinc finger C3H1-type profile. | 82 | 110 | IPR000571 | GO:0046872 | |
Bma10g01052 | 413 | SUPERFAMILY | CCCH zinc finger | 242 | 266 | IPR036855 | GO:0046872 | |
Bma10g01052 | 413 | MobiDBLite | consensus disorder prediction | 360 | 407 | - | - | |
Bma10g01052 | 413 | Gene3D | - | 67 | 117 | - | - | |
Bma10g01052 | 413 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 39 | 63 | IPR000571 | GO:0046872 | |
Bma10g01052 | 413 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 84 | 109 | IPR000571 | GO:0046872 | |
Bma10g01052 | 413 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 285 | 310 | IPR000571 | GO:0046872 | |
Bma10g01052 | 413 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 239 | 263 | IPR000571 | GO:0046872 | |
Bma10g01052 | 413 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 1 | 18 | IPR000571 | GO:0046872 | |
Bma10g01052 | 413 | SUPERFAMILY | CCCH zinc finger | 39 | 63 | IPR036855 | GO:0046872 | |
Bma10g01052 | 413 | MobiDBLite | consensus disorder prediction | 209 | 236 | - | - | |
Bma10g01052 | 413 | ProSiteProfiles | Zinc finger C3H1-type profile. | 283 | 311 | IPR000571 | GO:0046872 | |
Bma10g01052 | 413 | ProSiteProfiles | Zinc finger C3H1-type profile. | 1 | 19 | IPR000571 | GO:0046872 | |
Bma10g01052 | 413 | MobiDBLite | consensus disorder prediction | 345 | 413 | - | - | |
Bma10g01052 | 413 | ProSiteProfiles | Zinc finger C3H1-type profile. | 36 | 64 | IPR000571 | GO:0046872 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma10g01052 | Bma-Chr10:28823741 | Bma14g01187 | Bma-Chr14:17621737 | 1.79E-15 | dispersed | |
Bma10g01052 | Bma-Chr10:28823741 | Bma13g00044 | Bma-Chr13:499466 | 9.47E-15 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
57967 | PF00642 | zf-CCCH | 1.10E-09 | CL0537 | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma10g01052 | - | - | tcc:18613492 | 659.448 |