Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g01054 ATGGCAACAAACAGATTTGTGTGTGAAATCTGCAACAAAGGGTTTCAGAGGGATCAAAATCTTCAACTTCACAGACGAGGGCATAATCTACCATGGAAACTTCGGCAGAGAACGACAGCTGAAGTTAAGAAACGGGTCTACATTTGCCCCGAGCCATTGTGCGTTCATCACAACCCGGCTCGAGCTCTCGGAGATCTGACTGGAATCAAAAAACATTTCAGCAGAAAGCATGGTGAGAAGAAGTGGAAATGCGATAAGTGTTCTAAGAAATATGCTGTTCAATCTGACTGGAAGGCTCATCAAAAGACATGTGGGACAAGAGAATACAAATGTGACTGCGGAACAATCTTTTCCAGGAGAGATAGCTTTATTACACACAGGGCCTTTTGCGATGCATTAGCAGAAGAAAACAACAAAGTAAATCAAGAAATGATGAACAACAACAACAACAACATGTTACCCTCATCAAACTTGCAAAGCCTGAGAATGGCAGAATCCTTATTAGGATCAGCACCTCCTCAAATGGCTGAGCAACTGATGAACACCTGCGAAACCAAAAACCCTCTCAAGTTCCTCTCCCAAGACTTCGTTCCGATGCCATTTAAGACGATGAACATATCGACCCTCTTCCCCAACACCCCCAGAAACGTCTCGTCGTCTTCTTCTTCTTCAGCCCTGCAACTCAGTACTTCTACCTCTTCTTCTACCTTCAGCTACCTTCACGACTGTAAAAACGGCGCCCAAGTTTCTGGTCTAATACCTGCGATGTCGGCTACTGCGTTGCTACAGAAAGCAGCTCAAATGGGAGCCACTGCAAGCAATAGTATGAACTCACCCATGTTGCAGAAAAGCTTCATTTCTACAACAATGGCCGCTCCTGATCAGTTATCTCCCATCAGAACTTTGTACTCCGCTACAATGCAGCAGCACAGCGCTCCACACGACAACTTCCAACCGCCTTCCGATCAATCGGGCATGGTCGGCACTAACCACCCTCTCATCTACGCAAATTTAAGCTGTGCGTCACCTGTCATTGATAATGGAATGTTCAGCCAAATGATGATGGGAGGATCGGAAAATCAGAGGCGTAGAATTCTGAGAGATTTAGAGCAAGATGACTGTAACAGTACCGGGATGGTTGGAGAGAAAGAGTGGAGCTGGTTTTCAAGATATGGAGGGAGTAGTGGGAGCAATGAGACGATGACTCTAGATTTATTGGGAAAAGGAGGGTCGAGGAAAGGAAACTTGAATCAGCAAGAAGAGCAACAGCGGCTGGATTTGCCGATTTTAAATCCCTTTCAGGAAAAGATTTCAAGTGGAGAGTCGGGCATGGAAGAACCTGTTTGGGAGGTTTGA 1356 45.58 MATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTTAEVKKRVYICPEPLCVHHNPARALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHQKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEENNKVNQEMMNNNNNNMLPSSNLQSLRMAESLLGSAPPQMAEQLMNTCETKNPLKFLSQDFVPMPFKTMNISTLFPNTPRNVSSSSSSSALQLSTSTSSSTFSYLHDCKNGAQVSGLIPAMSATALLQKAAQMGATASNSMNSPMLQKSFISTTMAAPDQLSPIRTLYSATMQQHSAPHDNFQPPSDQSGMVGTNHPLIYANLSCASPVIDNGMFSQMMMGGSENQRRRILRDLEQDDCNSTGMVGEKEWSWFSRYGGSSGSNETMTLDLLGKGGSRKGNLNQQEEQQRLDLPILNPFQEKISSGESGMEEPVWEV 451
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 29024467 29026238 - Bma004987.1 Bma10g01054 90117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g01054 451 Gene3D Classic Zinc Finger 61 141 - -
Bma10g01054 451 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 1 427 - -
Bma10g01054 451 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 28 IPR013087 -
Bma10g01054 451 SMART c2h2final6 47 77 IPR013087 -
Bma10g01054 451 SMART c2h2final6 82 102 IPR013087 -
Bma10g01054 451 SMART c2h2final6 6 28 IPR013087 -
Bma10g01054 451 Pfam Zinc finger, C2H2 type 6 28 IPR013087 -
Bma10g01054 451 Coils Coil 130 150 - -
Bma10g01054 451 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Bma10g01054 451 Gene3D Classic Zinc Finger 6 49 - -
Bma10g01054 451 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 427 - -
Bma10g01054 451 SUPERFAMILY beta-beta-alpha zinc fingers 5 103 IPR036236 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma10g01054 Bma-Chr10:29024467 Bma04g00205 Bma-Chr4:1788132 1.02E-101 dispersed
Bma10g01054 Bma-Chr10:29024467 Bma15g01004 Bma-Chr15:39068700 3.01E-100 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57968 PF00096 zf-C2H2 0.0044 CL0361 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g01054 - - pvy:116116231 479.559