Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g01087 ATGGGTACCGGACCCCAGAATCCATGCCAAGAAGATGACGACGACGACCTTCATAGCGGTCGTGCCGCCACTATTTCAGGCCAATCTGTGTCCATGAGTGGCAGCATCGGATCCCCCTCCAGCCGAAGTGAGCAAACAATGGCTACCCCAGCCAGTGACAATACTTTCCTTCGATTAAACCACCTTGATATTCACGGAGACGATGCCGGATCGCAAGGCGCTATTTCTAACAAGAAGAAAAAGAGAGGTCAGCGTGCTGTTGGAGGCGATAAGAGTGGAAGAGGGCTTCGCCAATTCAGCATGAAAGTTTGTGAAAAAGTGGAAAGCAAGGGAAGAACAACCTATAACGAGGTTGCAGATGAACTTGTGGCTGAGTTTGCTGATCCTAGCAGTAGTCTTGCATCCCCAGATCAGCAACAATATGATGAAAAGAACATCCGGCGAAGGGTATACGATGCCCTAAATGTTCTCATGGCAATGGACATTATATCAAAGGATAAAAAAGAGATACAATGGAAGGGTTTACCTCGAACGAGTCTGAATGATGTTGAAGAACTAAAGACAGAGAGGCAGGGACTTAGAAATAGAATAGATAAGAAAGCTGCATACCTGCAAGAGCTGGAGGAGCAATACGTAGGCCTTCAGAATCTGATTCAGCGAAATGAACACTTATACAGCTCTGGAAATGCTCCAAGTGGTGGTGTGTCTTTACCTTTTATCCTGGTGCAGACCCGTCCGCATGCGACAGTTGAAGTAGAAATATCCGAAGATATGCAGCTCGTGCATTTTGACTTCAACAGCACGCCTTTTGAGCTCCACGATGACAACTACGTATTGAAGGCGATGAAGTTTTGTGAGAGACAAGCTGGTGATAATAGTGCGCAGAATTTCATTGCAGACGGAGGGGATGGTTCCGGAATCCAGGTCGTGTCTGTGAGGAAACCAGCATCACCACCTCTTCCTGGAATTCTCAAAGCACGTGTCAAGCACGAGCACTAA 999 47.05 MGTGPQNPCQEDDDDDLHSGRAATISGQSVSMSGSIGSPSSRSEQTMATPASDNTFLRLNHLDIHGDDAGSQGAISNKKKKRGQRAVGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSSSLASPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDVEELKTERQGLRNRIDKKAAYLQELEEQYVGLQNLIQRNEHLYSSGNAPSGGVSLPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCERQAGDNSAQNFIADGGDGSGIQVVSVRKPASPPLPGILKARVKHEH 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 31448737 31459959 + Bma005045.1 Bma10g01087 90150

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g01087 332 PANTHER TRANSCRIPTION FACTOR DP 20 332 - -
Bma10g01087 332 MobiDBLite consensus disorder prediction 1 94 - -
Bma10g01087 332 Pfam Transcription factor DP 182 295 IPR014889 -
Bma10g01087 332 PIRSF Txn_factor_DP 6 312 IPR015648 GO:0005667|GO:0051726
Bma10g01087 332 PANTHER TRANSCRIPTION FACTOR DP 20 332 IPR015648 GO:0005667|GO:0051726
Bma10g01087 332 Gene3D Transcription factor DP 180 300 IPR038168 -
Bma10g01087 332 SUPERFAMILY E2F-DP heterodimerization region 180 290 IPR037241 -
Bma10g01087 332 SMART E2F_TDP_2 91 174 IPR003316 GO:0005667|GO:0006355
Bma10g01087 332 SMART DP_2 181 330 IPR014889 -
Bma10g01087 332 Pfam E2F/DP family winged-helix DNA-binding domain 94 174 IPR003316 GO:0005667|GO:0006355
Bma10g01087 332 SUPERFAMILY Winged helix DNA-binding domain 94 175 IPR036390 -
Bma10g01087 332 MobiDBLite consensus disorder prediction 22 56 - -
Bma10g01087 332 CDD DP_DD 179 282 IPR014889 -
Bma10g01087 332 Gene3D - 86 179 IPR036388 -
Bma10g01087 332 Coils Coil 183 224 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g01087 K04683 TFDP1; transcription factor Dp-1 - zju:107414839 555.058
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma03g00799 CCT 3 376 E2F-DP Transcription Factor Family AT3G48160 56.7 4.4e-103 371.7
Bma10g01087 . 80 283 E2F-DP Transcription Factor Family AT5G02470 55.1 7.5e-60 227.6
Bma04g00537 . 14 467 E2F-DP Transcription Factor Family AT2G36010 53.2 4.2e-124 441.8
Bma07g00205 BCT 939 1324 E2F-DP Transcription Factor Family AT2G36010 55.8 4.7e-107 385.2
Bma11g00246 BCT 4 347 E2F-DP Transcription Factor Family AT2G36010 57.9 9.4e-100 360.9
Bma07g00205 BCT 962 1352 E2F-DP Transcription Factor Family AT5G22220 57.4 2.4e-100 362.8
Bma11g00246 BCT 5 350 E2F-DP Transcription Factor Family AT5G22220 58.1 7.9e-96 347.8
Bma04g00537 . 29 433 E2F-DP Transcription Factor Family AT5G22220 50.1 6.7e-87 318.2
Bma10g01087 . 80 283 E2F-DP Transcription Factor Family AT5G02470 55.1 7.5e-60 227.6
Bma07g00205 BCT 962 1352 E2F-DP Transcription Factor Family AT5G22220 57.4 2.4e-100 362.8
Bma11g00246 BCT 5 350 E2F-DP Transcription Factor Family AT5G22220 58.1 7.9e-96 347.8
Bma04g00537 . 29 433 E2F-DP Transcription Factor Family AT5G22220 50.1 6.7e-87 318.2
Bma04g00537 . 14 467 E2F-DP Transcription Factor Family AT2G36010 53.2 4.2e-124 441.8
Bma07g00205 BCT 939 1324 E2F-DP Transcription Factor Family AT2G36010 55.8 4.7e-107 385.2
Bma11g00246 BCT 4 347 E2F-DP Transcription Factor Family AT2G36010 57.9 9.4e-100 360.9
Bma03g00799 CCT 3 376 E2F-DP Transcription Factor Family AT3G48160 56.7 4.4e-103 371.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004186 1 2 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 3 1 1 1 1 1 1 1 1 3 3 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57969 PF08781 DP 2.20E-42 No_clan Bma TF