Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g01097 TTTGCGGAGCTTTTGGACTACGACCCTTCTCTTGCGCGTCTTCTTTTCTCCCAACCCACCGATTTCTTGCGTTTCTTTGACGATGCTGCTCTTTGGGCTCATAAAATTGTCTCAAGTGAGTTACAAGGTGATCATGTGGGCATTAAAAAGAACTTCATTCATGTTCGCATCAATGTCAGCGGTTCTCCACTCGAGTTTCCTGATACTTTTCCTAGCATTGGTTCCATAAGAGTGAGGCATCGCGGAATTCTTCTCACACTCAAAGGGACGGTAATCAGGTCTGGAGCAATCAAGATGTATGAAGGGGAGAGGTGGTATATGTGCCGGAAATGCAAGCACAAATTCCAAATTTATCCAGAATTAGAGAATCGTAACTCCATACAATTACCATCTTTTTGCCCCTCTCAAAGGACGAGAAGTTGTGAAGGTAAAAGTTTTGAGTGCTTGGAGGGGTCTATAATACGTCATGATTACCAAGAGATCAAAATTCAGGGGAGTACACAGATACTGGGTGTTGGGTCCATACCTCGCTCAATCCCTATCATTTTGAAGGATGACCTTGTTGACATTGTGAAAGCTGGAGATGATGTAATAGTTACTGGGGTCTTAAGTGCGAAGTGGTCTCCAGACCTTAAAGATGTACGGTGTGATCTTGATCCCATGTTAGTTGCTAATTATGTGAGGAGAACAAATGAGTTGAAATCAGACATAGACATTCCCGAAGATGTTATAGCGAGATTCAAGCAGTTTTGGTCAAATTTCAATGATACTCCATTGAAAGGGAGAAATGCCATTTTAAGAGGTATATGCCCCCAAGTTTATGGACTCTTCACCGTAAAACTTGCAGTTATGTTGACTCTTATTGGTGGGGCGCAACAAATTGATGCATCTGGGACTAAAGTTCGAGGGGAATCTCATTTGCTTTTGGTTGGGGATCCAGCAAAGGGGAATTCAGTTAAATGCTTGCAAAATCGTGCAGGTACTGGAAAGTCACAGTTCTTGAAATTTGCAGCAAAATTAAGCAATCGTTCTGTTATTACGACGGGATTAGGTAGCACTAGTGCTGGATTGACTGTTGCTGCTGTTAAGGATGGGGGTGAATGGATGTTGGAAGCTGGGGCACTTGTTTTGGCAGATGGAGGACTTTGTTGCATTGACGAAGTGGACAGCATGAGAGAACATGACAGGGCTACCATACATGAAGCAATGGAGCAGCAGACCATAAGCGTTGCTAAGGCTGGTCTTGTAACAACTCTCAGAACTAGGACGATAGTATTTGGTGCAACAAATCCTAAAGGGCACTATGATCCTGATCAACCTTTATCTGTCAATACAACCCTCTCTGGTCCCTTGCTGAGCAGATTTGATATAGTCCTTGTCCTCCTAGACACAAAGAATGCTGAATGGGATGCAGTTGTTTCTTCGCACATTCTGTCTGAGGGTGAAGTAGAACAAGGGAAGTTTGAAGATCTATCAAAATCTTGGTCTTTGCCTATGATTCGCAGGTATATTCACTTTGTGAAAGGGTACTTCAGACCTGTGCTGACAAAGGAAGCAGAAAATATCATCTCAAACTACTATCAGCTCCAAAGAAGATCGGCAACACATAATGCAGCCAGGACAACCGTCCGAATGCTTGAAAGTTTGATCCGCCTAGCTCAAGCTCACGCCAGACTCATGTTTAGAAATGAAGTTACTAGATTAGATGCCATTACGGCTATATTATGCGTTGAATCATCCATGACTACCTCAGCTATTGTGGACAGTGTCGGGAATGCACTCCACTCCAATTTTACAGAGAATCCAGATGAGGAATGTATCCTTTTCAGGTTTTGTTAG 1839 43.01 FAELLDYDPSLARLLFSQPTDFLRFFDDAALWAHKIVSSELQGDHVGIKKNFIHVRINVSGSPLEFPDTFPSIGSIRVRHRGILLTLKGTVIRSGAIKMYEGERWYMCRKCKHKFQIYPELENRNSIQLPSFCPSQRTRSCEGKSFECLEGSIIRHDYQEIKIQGSTQILGVGSIPRSIPIILKDDLVDIVKAGDDVIVTGVLSAKWSPDLKDVRCDLDPMLVANYVRRTNELKSDIDIPEDVIARFKQFWSNFNDTPLKGRNAILRGICPQVYGLFTVKLAVMLTLIGGAQQIDASGTKVRGESHLLLVGDPAKGNSVKCLQNRAGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVAAVKDGGEWMLEAGALVLADGGLCCIDEVDSMREHDRATIHEAMEQQTISVAKAGLVTTLRTRTIVFGATNPKGHYDPDQPLSVNTTLSGPLLSRFDIVLVLLDTKNAEWDAVVSSHILSEGEVEQGKFEDLSKSWSLPMIRRYIHFVKGYFRPVLTKEAENIISNYYQLQRRSATHNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCVESSMTTSAIVDSVGNALHSNFTENPDEECILFRFC 612
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 32664098 32685123 + Bma005063.1 Bma10g01097 90160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g01097 612 Pfam MCM OB domain 75 205 IPR033762 -
Bma10g01097 612 Pfam MCM P-loop domain 263 479 IPR001208 GO:0003677|GO:0005524|GO:0032508
Bma10g01097 612 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 3 607 IPR031327 GO:0003677|GO:0005524|GO:0032508
Bma10g01097 612 CDD MCM9 264 580 - -
Bma10g01097 612 Gene3D - 236 586 IPR027417 -
Bma10g01097 612 Gene3D - 100 156 - -
Bma10g01097 612 ProSiteProfiles MCM family domain profile. 261 477 IPR001208 GO:0003677|GO:0005524|GO:0032508
Bma10g01097 612 SUPERFAMILY Nucleic acid-binding proteins 2 212 IPR012340 -
Bma10g01097 612 Pfam MCM AAA-lid domain 500 580 IPR041562 -
Bma10g01097 612 SMART mcm 69 582 IPR031327 GO:0003677|GO:0005524|GO:0032508
Bma10g01097 612 Gene3D - 75 205 IPR012340 -
Bma10g01097 612 PRINTS Mini-chromosome maintenance (MCM) protein family signature 373 387 IPR001208 GO:0003677|GO:0005524|GO:0032508
Bma10g01097 612 PRINTS Mini-chromosome maintenance (MCM) protein family signature 401 414 IPR001208 GO:0003677|GO:0005524|GO:0032508
Bma10g01097 612 PRINTS Mini-chromosome maintenance (MCM) protein family signature 451 459 IPR001208 GO:0003677|GO:0005524|GO:0032508
Bma10g01097 612 PRINTS Mini-chromosome maintenance (MCM) protein family signature 424 436 IPR001208 GO:0003677|GO:0005524|GO:0032508
Bma10g01097 612 PRINTS Mini-chromosome maintenance (MCM) protein family signature 302 317 IPR001208 GO:0003677|GO:0005524|GO:0032508
Bma10g01097 612 PANTHER DNA HELICASE MCM9 3 607 - -
Bma10g01097 612 SMART AAA_5 316 465 IPR003593 -
Bma10g01097 612 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 271 584 IPR027417 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma10g01097 Bma15g00493 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g01547 Bma-Chr3:51453499 Bma10g01097 Bma-Chr10:32664098 2.75E-154 dispersed
Bma03g01549 Bma-Chr3:51472575 Bma10g01097 Bma-Chr10:32664098 3.34E-137 dispersed
Bma10g01097 Bma-Chr10:32664098 Bma15g00493 Bma-Chr15:5716328 2.00E-67 dispersed
Bma10g01097 Bma-Chr10:32664098 Bma03g00566 Bma-Chr3:4689080 2.78E-57 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g01097 K10738 - csv:101205171 1021.54