Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g01116 ATGGTCAAGGTATTTTATCTTCATCCAGTTCTACTCACAGAAGCCCCTCTTAACCCCAAGGCTAATCGTGAGAAGATGACACAAATTATGTTTGAGACCTTCAATACTCCCGCAATGTATGTTGCCATCCAGGCTGTCCTTTCCCTTTATGTAAGAGAATTGTTTAGTATTGTCCTGGATTCTGGAGATGGTGTCAGCCGTACTGTTCCAATCTATGAAGGCTATGCCCTTCCACATGCCATCCTTCATTTGGACCTCGCAGGCCGCGATCTCACTGACGCCCTAATGAAAATCTTGACTGAACGGGGCTACTCTTTCACCACCACTGCTGAGGGTGAAATTGTTAGAGATGCGAAAGAGAAATTAGCTTACATTGCTCTTGACTACGAACAAGAGCTTGAAACATCGAAAACCAGTTCTTCGGTAGAGAAGAGCTACGAGCTACCAGATGGACAGGTGATCACCATTGGTGCTGAAAGATTCAGATGCCCTGAAGTACTCTTCCAGCCATCAATGATCGGAATGGAAGCTGCTGCCATACACGAAACGACGTACAACTCAATCATGAAGTGCGACGTTGACATTAGGAAGGATCGCTTTGGCAATATCGTGCTCAGCGGGGGTTCTACTATGTTCCCTGGTATTGCTGATAGGATGAGCAAGGAATCACTGCATTAG 678 45.87 MVKVFYLHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYVRELFSIVLDSGDGVSRTVPIYEGYALPHAILHLDLAGRDLTDALMKILTERGYSFTTTAEGEIVRDAKEKLAYIALDYEQELETSKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAAIHETTYNSIMKCDVDIRKDRFGNIVLSGGSTMFPGIADRMSKESLH 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35416835 35417804 + Bma005106.1 Bma10g01116 90179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g01116 225 Gene3D Actin; Chain A, domain 4 86 177 - -
Bma10g01116 225 SUPERFAMILY Actin-like ATPase domain 56 222 IPR043129 -
Bma10g01116 225 PRINTS Actin signature 46 65 IPR004000 -
Bma10g01116 225 PRINTS Actin signature 22 35 IPR004000 -
Bma10g01116 225 PRINTS Actin signature 142 158 IPR004000 -
Bma10g01116 225 SUPERFAMILY Actin-like ATPase domain 8 50 IPR043129 -
Bma10g01116 225 Gene3D - 45 222 - -
Bma10g01116 225 CDD NBD_sugar-kinase_HSP70_actin 7 87 - -
Bma10g01116 225 PANTHER ACTIN 8 222 IPR004000 -
Bma10g01116 225 Pfam Actin 8 222 IPR004000 -
Bma10g01116 225 Gene3D - 8 44 - -
Bma10g01116 225 PANTHER ACTIN-97 8 222 - -
Bma10g01116 225 ProSitePatterns Actins and actin-related proteins signature. 11 23 IPR020902 -
Bma10g01116 225 SMART actin_3 1 225 IPR004000 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma09g00406 Bma-Chr9:34211262 Bma10g01116 Bma-Chr10:35416835 5.20E-141 dispersed
Bma10g01116 Bma-Chr10:35416835 Bma13g00594 Bma-Chr13:13651268 3.97E-67 dispersed
Bma10g01116 Bma-Chr10:35416835 Bma11g00120 Bma-Chr11:1143658 3.22E-144 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g01116 K10355 - csv:101221679 385.185