Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma10g01116 | ATGGTCAAGGTATTTTATCTTCATCCAGTTCTACTCACAGAAGCCCCTCTTAACCCCAAGGCTAATCGTGAGAAGATGACACAAATTATGTTTGAGACCTTCAATACTCCCGCAATGTATGTTGCCATCCAGGCTGTCCTTTCCCTTTATGTAAGAGAATTGTTTAGTATTGTCCTGGATTCTGGAGATGGTGTCAGCCGTACTGTTCCAATCTATGAAGGCTATGCCCTTCCACATGCCATCCTTCATTTGGACCTCGCAGGCCGCGATCTCACTGACGCCCTAATGAAAATCTTGACTGAACGGGGCTACTCTTTCACCACCACTGCTGAGGGTGAAATTGTTAGAGATGCGAAAGAGAAATTAGCTTACATTGCTCTTGACTACGAACAAGAGCTTGAAACATCGAAAACCAGTTCTTCGGTAGAGAAGAGCTACGAGCTACCAGATGGACAGGTGATCACCATTGGTGCTGAAAGATTCAGATGCCCTGAAGTACTCTTCCAGCCATCAATGATCGGAATGGAAGCTGCTGCCATACACGAAACGACGTACAACTCAATCATGAAGTGCGACGTTGACATTAGGAAGGATCGCTTTGGCAATATCGTGCTCAGCGGGGGTTCTACTATGTTCCCTGGTATTGCTGATAGGATGAGCAAGGAATCACTGCATTAG | 678 | 45.87 | MVKVFYLHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYVRELFSIVLDSGDGVSRTVPIYEGYALPHAILHLDLAGRDLTDALMKILTERGYSFTTTAEGEIVRDAKEKLAYIALDYEQELETSKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAAIHETTYNSIMKCDVDIRKDRFGNIVLSGGSTMFPGIADRMSKESLH | 225 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 35416835 | 35417804 | + | Bma005106.1 | Bma10g01116 | 90179 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma10g01116 | 225 | Gene3D | Actin; Chain A, domain 4 | 86 | 177 | - | - | |
Bma10g01116 | 225 | SUPERFAMILY | Actin-like ATPase domain | 56 | 222 | IPR043129 | - | |
Bma10g01116 | 225 | PRINTS | Actin signature | 46 | 65 | IPR004000 | - | |
Bma10g01116 | 225 | PRINTS | Actin signature | 22 | 35 | IPR004000 | - | |
Bma10g01116 | 225 | PRINTS | Actin signature | 142 | 158 | IPR004000 | - | |
Bma10g01116 | 225 | SUPERFAMILY | Actin-like ATPase domain | 8 | 50 | IPR043129 | - | |
Bma10g01116 | 225 | Gene3D | - | 45 | 222 | - | - | |
Bma10g01116 | 225 | CDD | NBD_sugar-kinase_HSP70_actin | 7 | 87 | - | - | |
Bma10g01116 | 225 | PANTHER | ACTIN | 8 | 222 | IPR004000 | - | |
Bma10g01116 | 225 | Pfam | Actin | 8 | 222 | IPR004000 | - | |
Bma10g01116 | 225 | Gene3D | - | 8 | 44 | - | - | |
Bma10g01116 | 225 | PANTHER | ACTIN-97 | 8 | 222 | - | - | |
Bma10g01116 | 225 | ProSitePatterns | Actins and actin-related proteins signature. | 11 | 23 | IPR020902 | - | |
Bma10g01116 | 225 | SMART | actin_3 | 1 | 225 | IPR004000 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma09g00406 | Bma-Chr9:34211262 | Bma10g01116 | Bma-Chr10:35416835 | 5.20E-141 | dispersed | |
Bma10g01116 | Bma-Chr10:35416835 | Bma13g00594 | Bma-Chr13:13651268 | 3.97E-67 | dispersed | |
Bma10g01116 | Bma-Chr10:35416835 | Bma11g00120 | Bma-Chr11:1143658 | 3.22E-144 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma10g01116 | K10355 | - | csv:101221679 | 385.185 |