Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g01122 ATGGATGAACCTTTTCTGTCTAGACCTGAAGGAGAAGGAGAATCTACCAGACTATCGACGAGAAGAGGATCTCCTTCTGGGTACATAGACATCGGACAATCCTATAGACGGTCAACTCCGCATCTAATCACAAGCGACACAATCATCCCAATTATCGCAACTCCGAGATCTCCGTACATAAACGTCCTATCCACTTCCCAGACACGAATCGCCGGCCGTTCCCACTCCGCGCCGGCGCTTTTCACCGACGTTAGGGAAGCGTTCCGACGTTCGTCCGACTCTAGGGCTTGTACGAAATTGCCCCCTTTGATCGTCCGGCAAGCTTTCATCGGCCTCATTCTGTACTTCGCGATCGGGGTAGTAATTTACCTCACCACCGGAAGTTTCAAAGGGCAAGCCACGTTTAAGCCAGTAGATGCTATGTACTTCACCGTCGTCACTCTGTGTACCATTGGGTATGGCGATATAGTTCCGGATTCCATATTTACAAAAATTTTTACTTGCGTTTTCATACTTGTTGGTTTTGGATTCCTTGACATTTTGCTCAACGGATTGGTCGTTTACATATGCGATCGTCAAGAGGCGGTCTTGCTGAGTACCGTCGACGAGAATCGATTCAACGCCATGATTAGAACTTATATGGTCGACAGAGAAAAGGGAAGAATGAGAATAAGAACGAAGGTGTGTTTGGCTGTTGGTATTGTGATTATCTGCATTGCAGTAGGGACAATCGCCATACATTTTCTGGAGACATTAACTTGGGTTGATAGCATCTACCTCTCGATTACTTCTGTGTCAACAGTGGGCTATGGAGATTTCTCTTTCACGACTGTCGAAGGAAGGTGCTTTGCAATTATCTGGCTGTTGGTCAGCACTTTGGCGGTTGCCAGGGCCTTTCTGTATCTGACTGAGTTCAGAATCGACAAAAGAAACAGAAAAACCATGACGTGGGTTCTTCAGAAGAAGATAACGATTGGGGATTTAGTGGCTGCCGACATAGATCACAATGGATTTATCAGCAAATCTGAGTTTGTCCTTTACAAGCTGAAAGAGATGGGGAAAATCTCAGAGAAAGATGTTGTAATGATCGGTAAACAATTTGATTTATTGGACGCCAGCAACTGTGGCAAAATAACACTAGCTGATCTCATGGAAGATTAA 1161 45.22 MDEPFLSRPEGEGESTRLSTRRGSPSGYIDIGQSYRRSTPHLITSDTIIPIIATPRSPYINVLSTSQTRIAGRSHSAPALFTDVREAFRRSSDSRACTKLPPLIVRQAFIGLILYFAIGVVIYLTTGSFKGQATFKPVDAMYFTVVTLCTIGYGDIVPDSIFTKIFTCVFILVGFGFLDILLNGLVVYICDRQEAVLLSTVDENRFNAMIRTYMVDREKGRMRIRTKVCLAVGIVIICIAVGTIAIHFLETLTWVDSIYLSITSVSTVGYGDFSFTTVEGRCFAIIWLLVSTLAVARAFLYLTEFRIDKRNRKTMTWVLQKKITIGDLVAADIDHNGFISKSEFVLYKLKEMGKISEKDVVMIGKQFDLLDASNCGKITLADLMED 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35936040 35937337 + Bma005120.1 Bma10g01122 90185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g01122 386 MobiDBLite consensus disorder prediction 1 30 - -
Bma10g01122 386 Gene3D - 328 386 - -
Bma10g01122 386 Pfam Ion channel 234 304 IPR013099 -
Bma10g01122 386 Pfam Ion channel 112 186 IPR013099 -
Bma10g01122 386 PRINTS Two pore domain K+ channel signature 266 275 IPR003280 GO:0005267|GO:0016020|GO:0071805
Bma10g01122 386 PRINTS Two pore domain K+ channel signature 146 174 IPR003280 GO:0005267|GO:0016020|GO:0071805
Bma10g01122 386 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 51 382 IPR003280 GO:0005267|GO:0016020|GO:0071805
Bma10g01122 386 Gene3D - 197 327 - -
Bma10g01122 386 ProSitePatterns EF-hand calcium-binding domain. 332 344 IPR018247 -
Bma10g01122 386 PANTHER OS01G0696100 PROTEIN 51 382 - -
Bma10g01122 386 Gene3D - 104 196 - -
Bma10g01122 386 SUPERFAMILY Voltage-gated potassium channels 103 189 - -
Bma10g01122 386 SUPERFAMILY Voltage-gated potassium channels 216 322 - -
Bma10g01122 386 SUPERFAMILY EF-hand 330 384 IPR011992 -
Bma10g01122 386 MobiDBLite consensus disorder prediction 1 17 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g01341 Bma-Chr3:28156926 Bma10g01122 Bma-Chr10:35936040 0 dispersed
Bma07g00794 Bma-Chr7:23806897 Bma10g01122 Bma-Chr10:35936040 3.49E-117 dispersed
Bma07g01248 Bma-Chr7:47466945 Bma10g01122 Bma-Chr10:35936040 1.42E-59 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g01122 K05389 - cit:102629027 539.265