Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g01123 ATGTCGAATCAAAAGAAGGATCCCTCCAAGCAGTTCGATCCATTCCATTACAATTATCAGGAAATCAGTCGGCCATGCTTTCCCTTCTTCGACGAAACTCCGTCAGTATTTTACAGTCAACCACCTCCCTCACAGAACCTACATCAAGTGCTAGATCCTTCCTCCTACATGACCTTCACTGACTCTTTGCACACTTCTATGGAGTATGAAACCCTTTCAAGAGTCTTTGATTTGCCATGCTCCTCGTCCGAAATTATATCTCCGATCGATAATGGCCGGAAGAACGCCAGCGGGGTCGAAGAGTCGGGAGAGAAGGTTGAGATCCCATCGTCGCCGAATTCCTCAGTTTCTTCTTCGTCAAACGAGAGAGTTCGAGAAGAAGATTCGGGTAAGAAGGATGAGGATCGGGCAAAAGTTTGCGAAGATGGAGAAGAAGACAACTCCAAAAAAGGGAACAAATCTAAGAAGAAAGAGAAACGCCAGAGAGAGCCAAGGTTTGCTTTTCTGACCAAGAGCGAGATCGATCACCTTGAAGATGGTTACAGATGGAGAAAATACGGACAGAAAGCTGTCAAGAACAGCCCCTACCCAAGAAGCTATTACAGATGCACAACCCAGAAATGCCAAGTGAAAAAGAGAGTGGAGAGGTCATTTCAGGATCCTTCTGTGGTGATAACAACATACGAAGGGCAACATAATCACCAGTGTCCGGCGACCCTCCGTGGAAATGCGCCGGGAATGTTGTCCCCTTCCCTATTTGCGGCTGCGACGGCTTCTGGGCCTCCTTACCTTCCGCCGGATCTATTGTCTCAGCTTTTCCCATCTAATATTTCCCAAGTTGATGCAGGCGGTTCCGTGCTCTATCAAAACATAAATCTCCACCACCACCATCTCCAGTTTCCTGACTATGGCTTACTGCAAGACTTAGTTCCATCGGCATTCCCTCATAAGCATGACCCATAA 963 47.25 MSNQKKDPSKQFDPFHYNYQEISRPCFPFFDETPSVFYSQPPPSQNLHQVLDPSSYMTFTDSLHTSMEYETLSRVFDLPCSSSEIISPIDNGRKNASGVEESGEKVEIPSSPNSSVSSSSNERVREEDSGKKDEDRAKVCEDGEEDNSKKGNKSKKKEKRQREPRFAFLTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCQVKKRVERSFQDPSVVITTYEGQHNHQCPATLRGNAPGMLSPSLFAAATASGPPYLPPDLLSQLFPSNISQVDAGGSVLYQNINLHHHHLQFPDYGLLQDLVPSAFPHKHDP 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 36032713 36034115 + Bma005121.1 Bma10g01123 90186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g01123 320 SMART WRKY_cls 177 236 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma10g01123 320 PANTHER WRKY TRANSCRIPTION FACTOR 71-RELATED 1 313 - -
Bma10g01123 320 Pfam WRKY DNA -binding domain 178 235 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma10g01123 320 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 1 313 IPR044810 GO:0003700
Bma10g01123 320 SUPERFAMILY WRKY DNA-binding domain 170 237 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bma10g01123 320 ProSiteProfiles WRKY domain profile. 172 237 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma10g01123 320 Gene3D WRKY domain 164 230 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bma10g01123 320 MobiDBLite consensus disorder prediction 121 152 - -
Bma10g01123 320 MobiDBLite consensus disorder prediction 86 164 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g01343 Bma-Chr3:28207900 Bma10g01123 Bma-Chr10:36032713 5.29E-164 dispersed
Bma10g00947 Bma-Chr10:20283799 Bma10g01123 Bma-Chr10:36032713 1.31E-45 dispersed
Bma10g01123 Bma-Chr10:36032713 Bma11g00956 Bma-Chr11:42675043 3.76E-52 dispersed
Bma10g01123 Bma-Chr10:36032713 Bma02g00935 Bma-Chr2:49202332 2.48E-54 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57971 PF03106 WRKY 1.10E-25 CL0274 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g01123 - - zju:107416121 352.058